X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.41 α = 90
b = 88.35 β = 102.99
c = 79.78 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r MIRRORS --
Diffraction Radiation
Monochromator Protocol
SI111 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 38.87 88.3 0.11 -- -- 2.4 -- 38241 -- 2.0 15.838
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.11 80.0 0.44 -- 2.2 2.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 77.74 -- -- -- 36310 1911 88.14 -- 0.17415 0.17215 0.2117 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.052 -- 133 2936 0.242 0.313 -- 96.78
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.673
Anisotropic B[1][1] 0.28
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -1.41
Anisotropic B[2][2] -0.37
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.55
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.001
r_dihedral_angle_1_deg 7.532
r_dihedral_angle_4_deg 12.063
r_dihedral_angle_3_deg 12.953
r_angle_refined_deg 1.483
r_gen_planes_refined 0.007
r_bond_other_d 0.001
r_bond_refined_d 0.012
r_angle_other_deg 0.885
r_chiral_restr 0.082
r_dihedral_angle_2_deg 34.587
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4883
Nucleic Acid Atoms 0
Heterogen Atoms 176
Solvent Atoms 423

Software

Software
Software Name Purpose
REFMAC refinement version: 5.6.0117
XDS data reduction
SCALA data scaling
MOLREP phasing