X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.18 α = 90
b = 105.32 β = 90
c = 106.8 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-2 -- ESRF ID14-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 25.6 95.5 0.12 -- -- 5.6 -- 79931 -- 2.7 11.44
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.79 93.7 0.59 -- 2.7 5.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 25.565 -- 1.36 -- 79856 8018 95.15 -- 0.1752 0.1719 0.205 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7 1.7193 -- 273 2306 0.2167 0.2677 -- 93.0
X Ray Diffraction 1.7193 1.7395 -- 280 2289 0.2028 0.2502 -- 94.0
X Ray Diffraction 1.7395 1.7608 -- 265 2320 0.2008 0.2504 -- 93.0
X Ray Diffraction 1.7608 1.783 -- 265 2307 0.1948 0.2487 -- 93.0
X Ray Diffraction 1.783 1.8065 -- 275 2295 0.1926 0.2583 -- 92.0
X Ray Diffraction 1.8065 1.8312 -- 231 2312 0.1808 0.2375 -- 93.0
X Ray Diffraction 1.8312 1.8574 -- 259 2298 0.1717 0.2371 -- 92.0
X Ray Diffraction 1.8574 1.8851 -- 252 2307 0.177 0.2124 -- 93.0
X Ray Diffraction 1.8851 1.9145 -- 233 2339 0.1673 0.2147 -- 92.0
X Ray Diffraction 1.9145 1.9459 -- 285 2286 0.1671 0.2201 -- 93.0
X Ray Diffraction 1.9459 1.9795 -- 267 2294 0.1611 0.2104 -- 92.0
X Ray Diffraction 1.9795 2.0154 -- 256 2316 0.1566 0.1958 -- 94.0
X Ray Diffraction 2.0154 2.0542 -- 261 2344 0.1544 0.2101 -- 93.0
X Ray Diffraction 2.0542 2.0961 -- 230 2340 0.1549 0.1838 -- 93.0
X Ray Diffraction 2.0961 2.1417 -- 253 2351 0.1525 0.1939 -- 94.0
X Ray Diffraction 2.1417 2.1915 -- 275 2358 0.143 0.1995 -- 94.0
X Ray Diffraction 2.1915 2.2462 -- 264 2337 0.1484 0.1943 -- 94.0
X Ray Diffraction 2.2462 2.3069 -- 284 2334 0.1549 0.1874 -- 94.0
X Ray Diffraction 2.3069 2.3748 -- 255 2395 0.154 0.1892 -- 95.0
X Ray Diffraction 2.3748 2.4514 -- 244 2432 0.1511 0.2004 -- 95.0
X Ray Diffraction 2.4514 2.5389 -- 274 2388 0.1627 0.1863 -- 96.0
X Ray Diffraction 2.5389 2.6404 -- 255 2437 0.1613 0.2012 -- 96.0
X Ray Diffraction 2.6404 2.7605 -- 245 2482 0.1656 0.1926 -- 97.0
X Ray Diffraction 2.7605 2.9058 -- 296 2482 0.1595 0.1967 -- 98.0
X Ray Diffraction 2.9058 3.0876 -- 289 2505 0.1679 0.1831 -- 100.0
X Ray Diffraction 3.0876 3.3255 -- 272 2547 0.1753 0.1917 -- 100.0
X Ray Diffraction 3.3255 3.6593 -- 263 2600 0.1849 0.2201 -- 100.0
X Ray Diffraction 3.6593 4.1868 -- 289 2575 0.1651 0.172 -- 100.0
X Ray Diffraction 4.1868 5.2674 -- 308 2567 0.1851 0.2149 -- 100.0
X Ray Diffraction 5.2674 25.5674 -- 320 2695 0.2314 0.2275 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -2.5197
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 3.5395
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.0199
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.07
f_dihedral_angle_d 14.402
f_angle_d 1.16
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5304
Nucleic Acid Atoms 0
Heterogen Atoms 115
Solvent Atoms 762

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
PHASER model building