X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.18 α = 90
b = 105.32 β = 90
c = 106.8 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-2 -- ESRF ID14-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 25.6 95.5 0.12 -- -- 5.6 -- 79931 -- 2.7 11.44
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.79 93.7 0.59 -- 2.7 5.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 25.565 -- 1.36 -- 79856 8018 95.15 -- 0.1752 0.1719 0.205 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7 1.7193 -- 273 2306 0.2167 0.2677 -- 93.0
X Ray Diffraction 1.7193 1.7395 -- 280 2289 0.2028 0.2502 -- 94.0
X Ray Diffraction 1.7395 1.7608 -- 265 2320 0.2008 0.2504 -- 93.0
X Ray Diffraction 1.7608 1.783 -- 265 2307 0.1948 0.2487 -- 93.0
X Ray Diffraction 1.783 1.8065 -- 275 2295 0.1926 0.2583 -- 92.0
X Ray Diffraction 1.8065 1.8312 -- 231 2312 0.1808 0.2375 -- 93.0
X Ray Diffraction 1.8312 1.8574 -- 259 2298 0.1717 0.2371 -- 92.0
X Ray Diffraction 1.8574 1.8851 -- 252 2307 0.177 0.2124 -- 93.0
X Ray Diffraction 1.8851 1.9145 -- 233 2339 0.1673 0.2147 -- 92.0
X Ray Diffraction 1.9145 1.9459 -- 285 2286 0.1671 0.2201 -- 93.0
X Ray Diffraction 1.9459 1.9795 -- 267 2294 0.1611 0.2104 -- 92.0
X Ray Diffraction 1.9795 2.0154 -- 256 2316 0.1566 0.1958 -- 94.0
X Ray Diffraction 2.0154 2.0542 -- 261 2344 0.1544 0.2101 -- 93.0
X Ray Diffraction 2.0542 2.0961 -- 230 2340 0.1549 0.1838 -- 93.0
X Ray Diffraction 2.0961 2.1417 -- 253 2351 0.1525 0.1939 -- 94.0
X Ray Diffraction 2.1417 2.1915 -- 275 2358 0.143 0.1995 -- 94.0
X Ray Diffraction 2.1915 2.2462 -- 264 2337 0.1484 0.1943 -- 94.0
X Ray Diffraction 2.2462 2.3069 -- 284 2334 0.1549 0.1874 -- 94.0
X Ray Diffraction 2.3069 2.3748 -- 255 2395 0.154 0.1892 -- 95.0
X Ray Diffraction 2.3748 2.4514 -- 244 2432 0.1511 0.2004 -- 95.0
X Ray Diffraction 2.4514 2.5389 -- 274 2388 0.1627 0.1863 -- 96.0
X Ray Diffraction 2.5389 2.6404 -- 255 2437 0.1613 0.2012 -- 96.0
X Ray Diffraction 2.6404 2.7605 -- 245 2482 0.1656 0.1926 -- 97.0
X Ray Diffraction 2.7605 2.9058 -- 296 2482 0.1595 0.1967 -- 98.0
X Ray Diffraction 2.9058 3.0876 -- 289 2505 0.1679 0.1831 -- 100.0
X Ray Diffraction 3.0876 3.3255 -- 272 2547 0.1753 0.1917 -- 100.0
X Ray Diffraction 3.3255 3.6593 -- 263 2600 0.1849 0.2201 -- 100.0
X Ray Diffraction 3.6593 4.1868 -- 289 2575 0.1651 0.172 -- 100.0
X Ray Diffraction 4.1868 5.2674 -- 308 2567 0.1851 0.2149 -- 100.0
X Ray Diffraction 5.2674 25.5674 -- 320 2695 0.2314 0.2275 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -2.5197
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 3.5395
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.0199
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.402
f_plane_restr 0.006
f_angle_d 1.16
f_chiral_restr 0.07
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5304
Nucleic Acid Atoms 0
Heterogen Atoms 115
Solvent Atoms 762

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
MOSFLM data reduction
SCALA data scaling
PHASER phasing