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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4ADJ
  •   Crystallization Hide
    Crystallization Experiments
    Details 4.4% PEG 8K, 100MM NAHEPES PH 8, 25% GLYCEROL, 1MM CAOACT
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 121.88 α = 90
    b = 126.9 β = 90
    c = 130.95 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Details DYNAMICALLY BENDABLE
    Collection Date 2010-09-14
     
    Diffraction Radiation
    Monochromator DOUBLE-CRYSTAL FIXED-EXIT
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06SA
    Wavelength 1.0
    Site SLS
    Beamline X06SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.94
    Resolution(Low) 43.7
    Number Reflections(Observed) 145923
    Percent Possible(Observed) 97.1
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 37.96
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 1.94
    Resolution(Low) 2.08
    Percent Possible(All) 81.5
    R Merge I(Observed) 0.48
    Mean I Over Sigma(Observed) 2.0
    Redundancy 2.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.94
    Resolution(Low) 38.8
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 145448
    Number of Reflections(R-Free) 7306
    Percent Reflections(Observed) 96.87
    R-Factor(Observed) 0.1825
    R-Work 0.1819
    R-Free 0.194
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 41.91
    Anisotropic B[1][1] -1.0282
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.2843
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.2561
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.94
    Shell Resolution(Low) 1.99
    Number of Reflections(R-Free) 420
    Number of Reflections(R-Work) 7905
    R-Factor(R-Work) 0.2366
    R-Factor(R-Free) 0.2505
    Percent Reflections(Observed) 96.87
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.007
    t_angle_deg 0.94
    t_omega_torsion 2.69
    t_other_torsion 14.31
     
    Coordinate Error
    Luzzati ESD(Observed) 0.255
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 9720
    Nucleic Acid Atoms 0
    Heterogen Atoms 101
    Solvent Atoms 1068
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement BUSTER 2.11.2
     
    Software
    refinement BUSTER version: 2.11.2
    model building PHASER