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X-RAY DIFFRACTION
Materials and Methods page
4ADB
  •   Crystallization Hide
    Crystallization Experiments
    pH 8
    Details 1.17 M SODIUM MALONATE PH 7.0, 0.09 M TRIS CHLORIDE PH 8.0, 0.02 M DI-ETHYLAMMONIUM FORMATE IN 150 PLUS 150 NL DROPS.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 184.71 α = 90
    b = 118.43 β = 96.69
    c = 109.79 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315)
    Type ADSC
    Collection Date 2011-04-07
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength 0.95370
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.2
    Resolution(Low) 19.8
    Number Reflections(Observed) 118526
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.13
    Redundancy 7.6
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.32
    Percent Possible(All) 99.0
    R Merge I(Observed) 0.61
    Mean I Over Sigma(Observed) 3.4
    Redundancy 7.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 109.05
    Number of Reflections(Observed) 112590
    Number of Reflections(R-Free) 5936
    Percent Reflections(Observed) 99.7
    R-Factor(Observed) 0.17323
    R-Work 0.17085
    R-Free 0.21885
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -1.52
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.35
    Anisotropic B[2][2] 3.51
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.91
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.257
    Number of Reflections(R-Free) 424
    Number of Reflections(R-Work) 7932
    R-Factor(R-Work) 0.232
    R-Factor(R-Free) 0.287
    Percent Reflections(Observed) 97.95
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.011
    r_chiral_restr 0.147
    r_dihedral_angle_4_deg 21.91
    r_dihedral_angle_3_deg 16.429
    r_dihedral_angle_2_deg 38.049
    r_dihedral_angle_1_deg 6.824
    r_angle_refined_deg 2.076
    r_bond_refined_d 0.021
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 12144
    Nucleic Acid Atoms 0
    Heterogen Atoms 66
    Solvent Atoms 644
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER