X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.01 α = 90
b = 104.87 β = 90
c = 106.43 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (QUANTUM 210) ADSC -- 2009-06-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 -- ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 21.4 92.6 0.1 -- -- 7.0 -- 111101 -- 5.0 6.71
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.58 90.2 0.36 -- 5.0 6.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.5 21.172 -- 1.37 -- 111027 5557 92.27 -- 0.1614 0.1602 0.1841 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5 1.517 -- 200 3338 0.1924 0.2248 -- 89.0
X Ray Diffraction 1.517 1.5349 -- 155 3363 0.1894 0.2332 -- 90.0
X Ray Diffraction 1.5349 1.5536 -- 176 3378 0.1718 0.1852 -- 89.0
X Ray Diffraction 1.5536 1.5733 -- 194 3380 0.1781 0.2067 -- 90.0
X Ray Diffraction 1.5733 1.594 -- 194 3400 0.1725 0.206 -- 90.0
X Ray Diffraction 1.594 1.6158 -- 169 3399 0.1665 0.2027 -- 91.0
X Ray Diffraction 1.6158 1.6389 -- 187 3425 0.1634 0.1938 -- 91.0
X Ray Diffraction 1.6389 1.6633 -- 182 3426 0.1566 0.1721 -- 91.0
X Ray Diffraction 1.6633 1.6893 -- 189 3439 0.1564 0.1795 -- 91.0
X Ray Diffraction 1.6893 1.717 -- 183 3453 0.1564 0.1892 -- 91.0
X Ray Diffraction 1.717 1.7466 -- 184 3474 0.1512 0.1738 -- 92.0
X Ray Diffraction 1.7466 1.7783 -- 171 3436 0.1434 0.1676 -- 91.0
X Ray Diffraction 1.7783 1.8125 -- 191 3457 0.1473 0.1892 -- 91.0
X Ray Diffraction 1.8125 1.8495 -- 199 3440 0.139 0.1871 -- 92.0
X Ray Diffraction 1.8495 1.8897 -- 170 3484 0.1433 0.1657 -- 92.0
X Ray Diffraction 1.8897 1.9336 -- 174 3474 0.1524 0.1674 -- 91.0
X Ray Diffraction 1.9336 1.9819 -- 187 3432 0.143 0.1703 -- 91.0
X Ray Diffraction 1.9819 2.0355 -- 163 3487 0.147 0.1756 -- 91.0
X Ray Diffraction 2.0355 2.0953 -- 194 3450 0.1537 0.1848 -- 91.0
X Ray Diffraction 2.0953 2.1629 -- 163 3459 0.1471 0.1784 -- 91.0
X Ray Diffraction 2.1629 2.2401 -- 167 3480 0.1481 0.1678 -- 91.0
X Ray Diffraction 2.2401 2.3297 -- 183 3459 0.1535 0.1764 -- 91.0
X Ray Diffraction 2.3297 2.4356 -- 195 3453 0.1543 0.1797 -- 91.0
X Ray Diffraction 2.4356 2.5638 -- 185 3491 0.1634 0.1752 -- 91.0
X Ray Diffraction 2.5638 2.7241 -- 176 3613 0.1643 0.1597 -- 94.0
X Ray Diffraction 2.7241 2.9339 -- 189 3715 0.1641 0.176 -- 96.0
X Ray Diffraction 2.9339 3.2282 -- 203 3812 0.1656 0.2046 -- 99.0
X Ray Diffraction 3.2282 3.6932 -- 200 3865 0.1563 0.1729 -- 100.0
X Ray Diffraction 3.6932 4.6449 -- 212 3919 0.1505 0.1667 -- 100.0
X Ray Diffraction 4.6449 21.1742 -- 222 4069 0.21 0.2367 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 9.3
Anisotropic B[1][1] -2.1822
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.9835
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.1987
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.083
f_dihedral_angle_d 14.201
f_angle_d 1.227
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5299
Nucleic Acid Atoms 0
Heterogen Atoms 131
Solvent Atoms 824

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
PHASER model building