X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.01 α = 90
b = 104.87 β = 90
c = 106.43 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2009-06-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 -- ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 21.4 92.6 0.1 -- -- 7.0 -- 111101 -- 5.0 6.71
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.58 90.2 0.36 -- 5.0 6.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.5 21.172 -- 1.37 -- 111027 5557 92.27 -- 0.1614 0.1602 0.1841 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5 1.517 -- 200 3338 0.1924 0.2248 -- 89.0
X Ray Diffraction 1.517 1.5349 -- 155 3363 0.1894 0.2332 -- 90.0
X Ray Diffraction 1.5349 1.5536 -- 176 3378 0.1718 0.1852 -- 89.0
X Ray Diffraction 1.5536 1.5733 -- 194 3380 0.1781 0.2067 -- 90.0
X Ray Diffraction 1.5733 1.594 -- 194 3400 0.1725 0.206 -- 90.0
X Ray Diffraction 1.594 1.6158 -- 169 3399 0.1665 0.2027 -- 91.0
X Ray Diffraction 1.6158 1.6389 -- 187 3425 0.1634 0.1938 -- 91.0
X Ray Diffraction 1.6389 1.6633 -- 182 3426 0.1566 0.1721 -- 91.0
X Ray Diffraction 1.6633 1.6893 -- 189 3439 0.1564 0.1795 -- 91.0
X Ray Diffraction 1.6893 1.717 -- 183 3453 0.1564 0.1892 -- 91.0
X Ray Diffraction 1.717 1.7466 -- 184 3474 0.1512 0.1738 -- 92.0
X Ray Diffraction 1.7466 1.7783 -- 171 3436 0.1434 0.1676 -- 91.0
X Ray Diffraction 1.7783 1.8125 -- 191 3457 0.1473 0.1892 -- 91.0
X Ray Diffraction 1.8125 1.8495 -- 199 3440 0.139 0.1871 -- 92.0
X Ray Diffraction 1.8495 1.8897 -- 170 3484 0.1433 0.1657 -- 92.0
X Ray Diffraction 1.8897 1.9336 -- 174 3474 0.1524 0.1674 -- 91.0
X Ray Diffraction 1.9336 1.9819 -- 187 3432 0.143 0.1703 -- 91.0
X Ray Diffraction 1.9819 2.0355 -- 163 3487 0.147 0.1756 -- 91.0
X Ray Diffraction 2.0355 2.0953 -- 194 3450 0.1537 0.1848 -- 91.0
X Ray Diffraction 2.0953 2.1629 -- 163 3459 0.1471 0.1784 -- 91.0
X Ray Diffraction 2.1629 2.2401 -- 167 3480 0.1481 0.1678 -- 91.0
X Ray Diffraction 2.2401 2.3297 -- 183 3459 0.1535 0.1764 -- 91.0
X Ray Diffraction 2.3297 2.4356 -- 195 3453 0.1543 0.1797 -- 91.0
X Ray Diffraction 2.4356 2.5638 -- 185 3491 0.1634 0.1752 -- 91.0
X Ray Diffraction 2.5638 2.7241 -- 176 3613 0.1643 0.1597 -- 94.0
X Ray Diffraction 2.7241 2.9339 -- 189 3715 0.1641 0.176 -- 96.0
X Ray Diffraction 2.9339 3.2282 -- 203 3812 0.1656 0.2046 -- 99.0
X Ray Diffraction 3.2282 3.6932 -- 200 3865 0.1563 0.1729 -- 100.0
X Ray Diffraction 3.6932 4.6449 -- 212 3919 0.1505 0.1667 -- 100.0
X Ray Diffraction 4.6449 21.1742 -- 222 4069 0.21 0.2367 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 9.3
Anisotropic B[1][1] -2.1822
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.9835
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.1987
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.227
f_chiral_restr 0.083
f_bond_d 0.008
f_plane_restr 0.007
f_dihedral_angle_d 14.201
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5299
Nucleic Acid Atoms 0
Heterogen Atoms 131
Solvent Atoms 824

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
MOSFLM data reduction
SCALA data scaling
PHASER phasing