X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5
Details 100 MM SODIUM ACETATE PH 5, 150 MM SODIUM CHLORIDE, 2.5 AMMONIUM SULPHATE

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 37.89 α = 90
b = 68.02 β = 103.95
c = 49.31 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (QUANTUM 315R) ADSC MIRRORS 2010-05-10
Diffraction Radiation
Monochromator Protocol
SI111 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 -- SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.45 39.2 98.0 0.05 -- -- 3.6 -- 42297 -- 0.0 18.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.45 1.54 94.2 0.26 -- 4.34 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.45 39.14 -- -- -- 40180 2115 100.0 -- 0.15827 0.15669 0.18774 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.449 1.487 -- 141 2674 0.202 0.258 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 9.709
Anisotropic B[1][1] 0.68
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.1
Anisotropic B[2][2] -0.66
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.03
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.784
r_scbond_it 2.374
r_mcangle_it 1.67
r_mcbond_other 0.293
r_mcbond_it 0.97
r_gen_planes_other 0.002
r_gen_planes_refined 0.007
r_chiral_restr 0.095
r_dihedral_angle_4_deg 10.84
r_dihedral_angle_3_deg 11.155
r_dihedral_angle_2_deg 36.325
r_dihedral_angle_1_deg 6.872
r_angle_other_deg 0.923
r_angle_refined_deg 1.62
r_bond_other_d 0.001
r_bond_refined_d 0.016
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2218
Nucleic Acid Atoms 0
Heterogen Atoms 107
Solvent Atoms 356

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
REFMAC Structure Solution
REFMAC 5.5.0102 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0102 refinement
REFMAC model building