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X-RAY DIFFRACTION
Materials and Methods page
4A7O
  •   Crystallization Hide
    Crystallization Experiments
    pH 5.8
    Details 60MM NA2HPO4 PH 6.0, 15% PEG 1000.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 40.03 α = 90
    b = 61.98 β = 90
    c = 86.8 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2008-12-10
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04
    Wavelength 0.9728
    Site DIAMOND
    Beamline I04
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 1.88
    Resolution(Low) 43.4
    Number Reflections(Observed) 18119
    Percent Possible(Observed) 99.1
    R Merge I(Observed) 0.14
    B(Isotropic) From Wilson Plot 16.69
    Redundancy 6.4
     
    High Resolution Shell Details
    Resolution(High) 1.88
    Resolution(Low) 1.98
    Percent Possible(All) 93.7
    R Merge I(Observed) 0.64
    Mean I Over Sigma(Observed) 2.9
    Redundancy 6.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.877
    Resolution(Low) 43.398
    Cut-off Sigma(F) 2.01
    Number of Reflections(Observed) 18107
    Number of Reflections(R-Free) 924
    Percent Reflections(Observed) 99.07
    R-Factor(Observed) 0.2047
    R-Work 0.2017
    R-Free 0.2616
     
    Temperature Factor Modeling
    Mean Isotropic B Value 21.461
    Anisotropic B[1][1] 9.9019
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.6072
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -8.2947
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8771
    Shell Resolution(Low) 1.9761
    Number of Reflections(R-Free) 89
    Number of Reflections(R-Work) 2297
    R-Factor(R-Work) 0.2518
    R-Factor(R-Free) 0.3524
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9761
    Shell Resolution(Low) 2.0999
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2438
    R-Factor(R-Work) 0.2224
    R-Factor(R-Free) 0.2939
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0999
    Shell Resolution(Low) 2.262
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2421
    R-Factor(R-Work) 0.2148
    R-Factor(R-Free) 0.2694
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.262
    Shell Resolution(Low) 2.4896
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2421
    R-Factor(R-Work) 0.2032
    R-Factor(R-Free) 0.2942
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4896
    Shell Resolution(Low) 2.8498
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2481
    R-Factor(R-Work) 0.2122
    R-Factor(R-Free) 0.2806
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8498
    Shell Resolution(Low) 3.5902
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2497
    R-Factor(R-Work) 0.1884
    R-Factor(R-Free) 0.2565
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5902
    Shell Resolution(Low) 43.4096
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.1807
    R-Factor(R-Free) 0.2072
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.068
    f_dihedral_angle_d 20.77
    f_angle_d 1.057
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1727
    Nucleic Acid Atoms 0
    Heterogen Atoms 28
    Solvent Atoms 139
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution AMORE
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building AMORE