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X-RAY DIFFRACTION
Materials and Methods page
4A6X
  •   Crystallization Hide
    Crystallization Experiments
    pH 5.8
    Details 60MM NA2HPO4 PH 6.0; 15% PEG1000
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 40.32 α = 90
    b = 87.35 β = 91.23
    c = 61.88 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Collection Date 2008-12-10
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04
    Wavelength 0.972800
    Site DIAMOND
    Beamline I04
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 1.55
    Resolution(Low) 43.67
    Number Reflections(Observed) 59656
    Percent Possible(Observed) 95.7
    R Merge I(Observed) 0.09
    B(Isotropic) From Wilson Plot 10.42
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 1.55
    Resolution(Low) 1.63
    Percent Possible(All) 93.8
    R Merge I(Observed) 0.65
    Mean I Over Sigma(Observed) 1.9
    Redundancy 3.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.548
    Resolution(Low) 43.675
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 59636
    Number of Reflections(R-Free) 2899
    Percent Reflections(Observed) 95.67
    R-Factor(Observed) 0.1979
    R-Work 0.1961
    R-Free 0.2349
     
    Temperature Factor Modeling
    Mean Isotropic B Value 15.04
    Anisotropic B[1][1] 3.8374
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.5125
    Anisotropic B[2][2] -4.9577
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.1203
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5477
    Shell Resolution(Low) 1.5731
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2585
    R-Factor(R-Work) 0.249
    R-Factor(R-Free) 0.2823
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5731
    Shell Resolution(Low) 1.6002
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.2472
    R-Factor(R-Free) 0.2943
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6002
    Shell Resolution(Low) 1.6293
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2669
    R-Factor(R-Work) 0.2392
    R-Factor(R-Free) 0.2809
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6293
    Shell Resolution(Low) 1.6607
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.2238
    R-Factor(R-Free) 0.3059
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6607
    Shell Resolution(Low) 1.6945
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.2181
    R-Factor(R-Free) 0.2811
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6945
    Shell Resolution(Low) 1.7314
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.2182
    R-Factor(R-Free) 0.256
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7314
    Shell Resolution(Low) 1.7717
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2670
    R-Factor(R-Work) 0.2044
    R-Factor(R-Free) 0.3013
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7717
    Shell Resolution(Low) 1.816
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.2021
    R-Factor(R-Free) 0.227
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.816
    Shell Resolution(Low) 1.8651
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2640
    R-Factor(R-Work) 0.1966
    R-Factor(R-Free) 0.2728
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8651
    Shell Resolution(Low) 1.92
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2704
    R-Factor(R-Work) 0.201
    R-Factor(R-Free) 0.2744
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.92
    Shell Resolution(Low) 1.9819
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2704
    R-Factor(R-Work) 0.1898
    R-Factor(R-Free) 0.2519
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9819
    Shell Resolution(Low) 2.0528
    Number of Reflections(R-Free) 174
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.1816
    R-Factor(R-Free) 0.2131
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0528
    Shell Resolution(Low) 2.135
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2727
    R-Factor(R-Work) 0.1844
    R-Factor(R-Free) 0.2488
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.135
    Shell Resolution(Low) 2.2321
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2707
    R-Factor(R-Work) 0.1841
    R-Factor(R-Free) 0.2328
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2321
    Shell Resolution(Low) 2.3498
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2723
    R-Factor(R-Work) 0.1883
    R-Factor(R-Free) 0.2245
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3498
    Shell Resolution(Low) 2.497
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2746
    R-Factor(R-Work) 0.1951
    R-Factor(R-Free) 0.2698
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.497
    Shell Resolution(Low) 2.6898
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2754
    R-Factor(R-Work) 0.1958
    R-Factor(R-Free) 0.2449
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6898
    Shell Resolution(Low) 2.9604
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2758
    R-Factor(R-Work) 0.2036
    R-Factor(R-Free) 0.2116
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9604
    Shell Resolution(Low) 3.3886
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2759
    R-Factor(R-Work) 0.1831
    R-Factor(R-Free) 0.1988
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3886
    Shell Resolution(Low) 4.2688
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2802
    R-Factor(R-Work) 0.1679
    R-Factor(R-Free) 0.1883
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2688
    Shell Resolution(Low) 43.6924
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2804
    R-Factor(R-Work) 0.1903
    R-Factor(R-Free) 0.1954
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.07
    f_dihedral_angle_d 17.767
    f_angle_d 1.115
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3462
    Nucleic Acid Atoms 0
    Heterogen Atoms 64
    Solvent Atoms 627
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution AMORE
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building AMORE