X-RAY DIFFRACTION Experimental Data & Validation

X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Details pH 7.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 56.59 α = 90
b = 179.51 β = 96.28
c = 99.81 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC FOCUSSING MIRRORS 2010-03-12
Diffraction Radiation
Monochromator Protocol
CHANNEL CUT ESRF MONOCHROMATOR SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 -- ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 99 98.7 0.18 -- -- 3.74 -- 43288 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.9 49.42 -- -- -- 41123 2165 100.0 -- 0.25478 0.25297 0.28985 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9 2.975 -- 162 3077 0.356 0.394 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 45.666
Anisotropic B[1][1] -0.45
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.05
Anisotropic B[2][2] 0.3
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.15
RMS Deviations
Key Refinement Restraint Deviation
r_mcbond_it 0.779
r_chiral_restr 0.095
r_scbond_it 2.006
r_scangle_it 3.721
r_angle_refined_deg 1.613
r_dihedral_angle_2_deg 29.887
r_bond_refined_d 0.015
r_mcangle_it 1.548
r_dihedral_angle_3_deg 16.347
r_dihedral_angle_1_deg 6.45
r_gen_planes_refined 0.006
r_dihedral_angle_4_deg 17.318
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 17538
Nucleic Acid Atoms 0
Heterogen Atoms 362
Solvent Atoms 12

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XSCALE Data Reduction (data scaling)
REFMAC 5.5.0102 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0102 refinement