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X-RAY DIFFRACTION
Materials and Methods page
3ZUN
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.1 M NA CITRATE PH 5.8, 0.2 M MG ACETATE, 15% PEG 8000, 50 MM DTT.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.4 α = 90
    b = 93.4 β = 90
    c = 362.89 γ = 90
     
    Space Group
    Space Group Name:    P 41 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Collection Date 2010-11-17
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength 0.979030
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 2.5
    Resolution(Low) 45
    Number Reflections(Observed) 56353
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.14
    B(Isotropic) From Wilson Plot 53.2
    Redundancy 6.3
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.66
    Percent Possible(All) 98.6
    R Merge I(Observed) 0.52
    Mean I Over Sigma(Observed) 2.85
    Redundancy 5.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 41.5
    Number of Reflections(Observed) 53932
    Number of Reflections(R-Free) 2417
    Percent Reflections(Observed) 99.75
    R-Factor(Observed) 0.23235
    R-Work 0.22894
    R-Free 0.30152
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.35
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.01
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.504
    Shell Resolution(Low) 2.569
    Number of Reflections(R-Free) 0
    Number of Reflections(R-Work) 3995
    R-Factor(R-Work) 0.333
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.344
    r_scbond_it 1.995
    r_mcangle_it 1.471
    r_mcbond_it 0.76
    r_gen_planes_refined 0.007
    r_chiral_restr 0.101
    r_dihedral_angle_4_deg 22.599
    r_dihedral_angle_3_deg 18.783
    r_dihedral_angle_2_deg 37.571
    r_dihedral_angle_1_deg 7.263
    r_angle_refined_deg 1.63
    r_bond_refined_d 0.014
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10268
    Nucleic Acid Atoms 0
    Heterogen Atoms 118
    Solvent Atoms 223
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building PHASER