X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 153.23 α = 90
b = 153.23 β = 90
c = 201.73 γ = 120
Symmetry
Space Group H 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (QUANTUM 315R) ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.48 40 97.4 0.08 -- -- 7.1 -- 31542 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.48 2.52 99.2 0.43 -- 4.92 6.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
ISOMORPHOUS REPLACEMENT 2.48 20.0 -- -- -- 30190 1286 97.33 -- 0.18789 0.18532 0.24916 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.481 2.545 -- 100 2188 0.217 0.311 -- 97.69
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 46.037
Anisotropic B[1][1] -0.57
Anisotropic B[1][2] -0.29
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.57
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.86
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 4.966
r_scbond_it 3.603
r_mcangle_it 2.377
r_mcbond_it 1.184
r_nbd_refined 0.201
r_gen_planes_refined 0.004
r_chiral_restr 0.083
r_dihedral_angle_4_deg 22.344
r_dihedral_angle_3_deg 16.84
r_dihedral_angle_2_deg 34.921
r_dihedral_angle_1_deg 5.71
r_angle_refined_deg 1.289
r_bond_refined_d 0.01
r_nbtor_refined 0.306
r_xyhbond_nbd_refined 0.134
r_symmetry_vdw_refined 0.217
r_symmetry_hbond_refined 0.167
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5905
Nucleic Acid Atoms 0
Heterogen Atoms 82
Solvent Atoms 198

Software

Computing
Computing Package Purpose
REFMAC 5.3.0006 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.3.0006 refinement