POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3ZOR
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 0.2 M SODIUM FLUORIDE AND 20% PEG 3350 AT 291 K, pH 7.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 65.31 α = 90
    b = 79.79 β = 90
    c = 97.36 γ = 90
     
    Space Group
    Space Group Name:    I 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Details MIRRORS
    Collection Date 2010-06-05
     
    Diffraction Radiation
    Monochromator SI(111) MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength 0.9791
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.95
    Resolution(Low) 48.98
    Number Reflections(Observed) 5596
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.16
    Redundancy 6.1
     
    High Resolution Shell Details
    Resolution(High) 2.95
    Resolution(Low) 3.11
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.46
    Mean I Over Sigma(Observed) 3.4
    Redundancy 6.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.95
    Resolution(Low) 48.73
    Number of Reflections(Observed) 5313
    Number of Reflections(R-Free) 252
    Percent Reflections(Observed) 99.3
    R-Factor(Observed) 0.24045
    R-Work 0.23779
    R-Free 0.29516
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.877
    Anisotropic B[1][1] -2.58
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.96
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.54
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.95
    Shell Resolution(Low) 3.027
    Number of Reflections(R-Free) 14
    Number of Reflections(R-Work) 368
    R-Factor(R-Work) 0.25
    R-Factor(R-Free) 0.292
    Percent Reflections(Observed) 99.74
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.01
    r_chiral_restr 0.107
    r_dihedral_angle_4_deg 20.774
    r_dihedral_angle_3_deg 17.107
    r_dihedral_angle_2_deg 31.684
    r_dihedral_angle_1_deg 6.334
    r_angle_refined_deg 1.739
    r_bond_refined_d 0.016
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1823
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building PHASER