X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 45.46 α = 90
b = 186.18 β = 90
c = 124.88 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-3 -- ESRF ID14-3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 44 97.0 0.06 -- -- 2.5 -- 36717 -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.99 44.15 -- -- -- 34168 1798 97.94 -- 0.18474 0.18132 0.25251 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.994 2.046 -- 143 2370 0.215 0.291 -- 94.12
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 36.524
Anisotropic B[1][1] -0.14
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.17
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.03
RMS Deviations
Key Refinement Restraint Deviation
r_sphericity_bonded 14.664
r_sphericity_free 29.817
r_rigid_bond_restr 11.758
r_scbond_it 6.347
r_mcangle_it 6.321
r_mcbond_other 5.64
r_mcbond_it 5.643
r_gen_planes_other 0.009
r_gen_planes_refined 0.009
r_chiral_restr 0.192
r_dihedral_angle_4_deg 18.779
r_dihedral_angle_3_deg 18.575
r_dihedral_angle_2_deg 32.914
r_dihedral_angle_1_deg 7.864
r_angle_other_deg 2.046
r_angle_refined_deg 2.236
r_bond_other_d 0.002
r_bond_refined_d 0.018
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3120
Nucleic Acid Atoms 0
Heterogen Atoms 96
Solvent Atoms 189

Software

Computing
Computing Package Purpose
REFMAC 5.7.0032 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.7.0032 refinement