X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 78.24 α = 90
b = 103.57 β = 90
c = 141.67 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH MIRRORS --
Diffraction Radiation
Monochromator Protocol
DOUBLE CRYSTAL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.2 -- BESSY 14.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 19.8 99.6 0.05 -- -- 5.7 -- 138381 -- -3.0 18.81
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.65 1.75 98.6 0.51 -- 2.64 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.65 19.828 -- 1.99 -- 138378 4155 99.88 -- 0.1584 0.1573 0.1909 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.65 1.6687 -- 69 4474 0.2396 0.2352 -- 99.0
X Ray Diffraction 1.6687 1.6884 -- 208 4311 0.2335 0.279 -- 100.0
X Ray Diffraction 1.6884 1.7089 -- 0 4574 0.2245 0.0 -- 100.0
X Ray Diffraction 1.7089 1.7306 -- 277 4321 0.2115 0.2642 -- 100.0
X Ray Diffraction 1.7306 1.7533 -- 0 4543 0.2058 0.0 -- 100.0
X Ray Diffraction 1.7533 1.7773 -- 277 4315 0.1941 0.2411 -- 100.0
X Ray Diffraction 1.7773 1.8027 -- 0 4542 0.1865 0.0 -- 100.0
X Ray Diffraction 1.8027 1.8296 -- 277 4310 0.1783 0.2086 -- 100.0
X Ray Diffraction 1.8296 1.8582 -- 0 4581 0.1712 0.0 -- 100.0
X Ray Diffraction 1.8582 1.8886 -- 277 4300 0.1689 0.218 -- 100.0
X Ray Diffraction 1.8886 1.9211 -- 0 4571 0.1533 0.0 -- 100.0
X Ray Diffraction 1.9211 1.956 -- 277 4323 0.154 0.2038 -- 100.0
X Ray Diffraction 1.956 1.9936 -- 0 4602 0.1536 0.0 -- 100.0
X Ray Diffraction 1.9936 2.0343 -- 277 4260 0.1467 0.1894 -- 100.0
X Ray Diffraction 2.0343 2.0785 -- 0 4598 0.1452 0.0 -- 100.0
X Ray Diffraction 2.0785 2.1268 -- 277 4333 0.145 0.1902 -- 100.0
X Ray Diffraction 2.1268 2.1799 -- 0 4599 0.1442 0.0 -- 100.0
X Ray Diffraction 2.1799 2.2388 -- 277 4333 0.141 0.1913 -- 100.0
X Ray Diffraction 2.2388 2.3045 -- 0 4622 0.1485 0.0 -- 100.0
X Ray Diffraction 2.3045 2.3788 -- 277 4305 0.1441 0.18 -- 100.0
X Ray Diffraction 2.3788 2.4637 -- 0 4616 0.1397 0.0 -- 100.0
X Ray Diffraction 2.4637 2.5621 -- 277 4331 0.1389 0.1793 -- 100.0
X Ray Diffraction 2.5621 2.6785 -- 0 4624 0.1481 0.0 -- 100.0
X Ray Diffraction 2.6785 2.8193 -- 277 4375 0.154 0.1833 -- 100.0
X Ray Diffraction 2.8193 2.9954 -- 0 4645 0.1562 0.0 -- 100.0
X Ray Diffraction 2.9954 3.2257 -- 277 4371 0.1614 0.1891 -- 100.0
X Ray Diffraction 3.2257 3.5487 -- 0 4679 0.1501 0.0 -- 100.0
X Ray Diffraction 3.5487 4.0584 -- 277 4410 0.1474 0.1822 -- 100.0
X Ray Diffraction 4.0584 5.0987 -- 0 4735 0.1294 0.0 -- 100.0
X Ray Diffraction 5.0987 19.8292 -- 277 4620 0.1974 0.1761 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 24.0
Anisotropic B[1][1] 1.0965
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.1167
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.2132
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.084
f_dihedral_angle_d 13.064
f_angle_d 1.416
f_bond_d 0.012
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7858
Nucleic Acid Atoms 0
Heterogen Atoms 101
Solvent Atoms 1234

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
MOLREP Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
MOLREP model building