X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 78.24 α = 90
b = 103.57 β = 90
c = 141.67 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH MIRRORS --
Diffraction Radiation
Monochromator Protocol
DOUBLE CRYSTAL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.2 -- BESSY 14.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 19.8 99.6 0.05 -- -- 5.7 -- 138381 -- -3.0 18.81
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.65 1.75 98.6 0.51 -- 2.64 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.65 19.828 -- 1.99 -- 138378 4155 99.88 -- 0.1584 0.1573 0.1909 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.65 1.6687 -- 69 4474 0.2396 0.2352 -- 99.0
X Ray Diffraction 1.6687 1.6884 -- 208 4311 0.2335 0.279 -- 100.0
X Ray Diffraction 1.6884 1.7089 -- 0 4574 0.2245 0.0 -- 100.0
X Ray Diffraction 1.7089 1.7306 -- 277 4321 0.2115 0.2642 -- 100.0
X Ray Diffraction 1.7306 1.7533 -- 0 4543 0.2058 0.0 -- 100.0
X Ray Diffraction 1.7533 1.7773 -- 277 4315 0.1941 0.2411 -- 100.0
X Ray Diffraction 1.7773 1.8027 -- 0 4542 0.1865 0.0 -- 100.0
X Ray Diffraction 1.8027 1.8296 -- 277 4310 0.1783 0.2086 -- 100.0
X Ray Diffraction 1.8296 1.8582 -- 0 4581 0.1712 0.0 -- 100.0
X Ray Diffraction 1.8582 1.8886 -- 277 4300 0.1689 0.218 -- 100.0
X Ray Diffraction 1.8886 1.9211 -- 0 4571 0.1533 0.0 -- 100.0
X Ray Diffraction 1.9211 1.956 -- 277 4323 0.154 0.2038 -- 100.0
X Ray Diffraction 1.956 1.9936 -- 0 4602 0.1536 0.0 -- 100.0
X Ray Diffraction 1.9936 2.0343 -- 277 4260 0.1467 0.1894 -- 100.0
X Ray Diffraction 2.0343 2.0785 -- 0 4598 0.1452 0.0 -- 100.0
X Ray Diffraction 2.0785 2.1268 -- 277 4333 0.145 0.1902 -- 100.0
X Ray Diffraction 2.1268 2.1799 -- 0 4599 0.1442 0.0 -- 100.0
X Ray Diffraction 2.1799 2.2388 -- 277 4333 0.141 0.1913 -- 100.0
X Ray Diffraction 2.2388 2.3045 -- 0 4622 0.1485 0.0 -- 100.0
X Ray Diffraction 2.3045 2.3788 -- 277 4305 0.1441 0.18 -- 100.0
X Ray Diffraction 2.3788 2.4637 -- 0 4616 0.1397 0.0 -- 100.0
X Ray Diffraction 2.4637 2.5621 -- 277 4331 0.1389 0.1793 -- 100.0
X Ray Diffraction 2.5621 2.6785 -- 0 4624 0.1481 0.0 -- 100.0
X Ray Diffraction 2.6785 2.8193 -- 277 4375 0.154 0.1833 -- 100.0
X Ray Diffraction 2.8193 2.9954 -- 0 4645 0.1562 0.0 -- 100.0
X Ray Diffraction 2.9954 3.2257 -- 277 4371 0.1614 0.1891 -- 100.0
X Ray Diffraction 3.2257 3.5487 -- 0 4679 0.1501 0.0 -- 100.0
X Ray Diffraction 3.5487 4.0584 -- 277 4410 0.1474 0.1822 -- 100.0
X Ray Diffraction 4.0584 5.0987 -- 0 4735 0.1294 0.0 -- 100.0
X Ray Diffraction 5.0987 19.8292 -- 277 4620 0.1974 0.1761 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 24.0
Anisotropic B[1][1] 1.0965
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.1167
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.2132
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 13.064
f_plane_restr 0.007
f_angle_d 1.416
f_chiral_restr 0.084
f_bond_d 0.012
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7858
Nucleic Acid Atoms 0
Heterogen Atoms 101
Solvent Atoms 1234

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
XDS data scaling
MOLREP phasing