X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 55.75 α = 90
b = 121.21 β = 90
c = 131.86 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 73
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 97.2 0.1 -- -- 5.9 -- 69213 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 83.9 0.6 -- 2.3 3.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 131.86 -- -- -- 67403 1722 97.02 -- 0.20199 0.2013 0.22873 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.949 -- 108 3805 0.263 0.304 -- 78.24
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 35.097
Anisotropic B[1][1] -0.84
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.91
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.07
RMS Deviations
Key Refinement Restraint Deviation
r_chiral_restr 0.091
r_dihedral_angle_3_deg 15.785
r_bond_refined_d 0.009
r_angle_refined_deg 1.234
r_dihedral_angle_1_deg 5.351
r_dihedral_angle_2_deg 35.46
r_dihedral_angle_4_deg 16.185
r_gen_planes_refined 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5813
Nucleic Acid Atoms 0
Heterogen Atoms 74
Solvent Atoms 380

Software

Software
Software Name Purpose
REFMAC refinement version: 5.6.0117
XDS data reduction
SCALEPACK data scaling
MOLREP phasing