X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 7
Details pH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.57 α = 90
b = 112.38 β = 90
c = 226.99 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARREASERCH -- 2009-06-26
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON MAX II BEAMLINE I911-3 -- MAX II I911-3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.5 29.21 99.9 0.09 -- -- 7.4 -- 71276 -- 3.0 48.97
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.5 2.64 100.0 0.5 -- 4.9 7.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.5 29.193 -- 1.39 -- 71157 1426 99.94 -- 0.177 0.1761 0.2255 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5001 2.5894 -- 153 6870 0.2631 0.3334 -- 100.0
X Ray Diffraction 2.5894 2.693 -- 150 6870 0.2381 0.3293 -- 100.0
X Ray Diffraction 2.693 2.8155 -- 142 6892 0.2201 0.2766 -- 100.0
X Ray Diffraction 2.8155 2.9638 -- 135 6916 0.2049 0.2641 -- 100.0
X Ray Diffraction 2.9638 3.1492 -- 151 6905 0.1941 0.2738 -- 100.0
X Ray Diffraction 3.1492 3.3921 -- 134 6945 0.183 0.2294 -- 100.0
X Ray Diffraction 3.3921 3.7328 -- 140 6967 0.1694 0.2023 -- 100.0
X Ray Diffraction 3.7328 4.2715 -- 138 6993 0.1426 0.1813 -- 100.0
X Ray Diffraction 4.2715 5.3761 -- 140 7076 0.1355 0.1856 -- 100.0
X Ray Diffraction 5.3761 29.1953 -- 143 7297 0.1874 0.2202 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -1.0826
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.6685
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.4141
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.02
f_chiral_restr 0.068
f_dihedral_angle_d 16.266
f_angle_d 1.013
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8370
Nucleic Acid Atoms 0
Heterogen Atoms 86
Solvent Atoms 676

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
REFMAC Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
REFMAC model building