X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details pH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.99 α = 90
b = 113.52 β = 90
c = 227.51 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- CCDCHESS -- 2010-06-03
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON MAX II BEAMLINE I911-3 -- MAX II I911-3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 30.02 99.3 0.07 -- -- 6.7 -- 64575 -- 3.0 55.38
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.72 99.1 0.5 -- 5.0 6.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.6 29.333 -- 1.34 -- 64481 1283 99.91 -- 0.1763 0.1755 0.2171 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6 2.704 -- 150 6931 0.251 0.2879 -- 100.0
X Ray Diffraction 2.704 2.827 -- 141 6937 0.262 0.3354 -- 100.0
X Ray Diffraction 2.827 2.9759 -- 135 6951 0.2419 0.3352 -- 100.0
X Ray Diffraction 2.9759 3.1622 -- 158 6941 0.2165 0.2811 -- 100.0
X Ray Diffraction 3.1622 3.406 -- 135 6958 0.1984 0.2129 -- 100.0
X Ray Diffraction 3.406 3.7481 -- 140 7018 0.1798 0.2215 -- 100.0
X Ray Diffraction 3.7481 4.289 -- 137 7035 0.153 0.2008 -- 100.0
X Ray Diffraction 4.289 5.3982 -- 140 7111 0.133 0.1647 -- 100.0
X Ray Diffraction 5.3982 29.3348 -- 147 7316 0.1589 0.1845 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 2.0009
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.1511
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.152
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.082
f_dihedral_angle_d 17.463
f_angle_d 1.139
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8356
Nucleic Acid Atoms 0
Heterogen Atoms 55
Solvent Atoms 454

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
REFMAC Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
REFMAC model building