X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details pH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 80.01 α = 90
b = 113.17 β = 90
c = 226.35 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- 2010-06-03
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON MAX II BEAMLINE I911-3 -- MAX_II I911-3

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 29.22 99.9 0.09 -- -- 7.4 -- 63495 -- 3.0 48.97
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.72 100.0 0.44 -- 3.5 7.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.6 29.22 -- 1.35 -- 63450 1260 99.09 -- 0.1712 0.1704 0.2152 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6 2.704 -- 140 6802 0.2445 0.2882 -- 99.0
X Ray Diffraction 2.704 2.827 -- 144 6801 0.2385 0.3128 -- 99.0
X Ray Diffraction 2.827 2.9759 -- 135 6844 0.2171 0.2919 -- 99.0
X Ray Diffraction 2.9759 3.1622 -- 147 6826 0.1961 0.2265 -- 99.0
X Ray Diffraction 3.1622 3.406 -- 132 6854 0.1861 0.217 -- 99.0
X Ray Diffraction 3.406 3.7481 -- 140 6902 0.1702 0.2242 -- 99.0
X Ray Diffraction 3.7481 4.289 -- 140 6931 0.1423 0.1868 -- 99.0
X Ray Diffraction 4.289 5.3981 -- 136 6998 0.1311 0.1643 -- 99.0
X Ray Diffraction 5.3981 29.2216 -- 146 7232 0.1664 0.2081 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 1.5365
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.391
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.9275
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_dihedral_angle_d 15.995
f_angle_d 1.169
f_bond_d 0.008
f_chiral_restr 0.079
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8363
Nucleic Acid Atoms 0
Heterogen Atoms 69
Solvent Atoms 613

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
XDS data reduction
SCALA data scaling
REFMAC phasing