POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3ZLI
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.2M TRIMETHYLAMINE N-OXIDE; 0.1M HEPES PH 7.5; 10%(W/V) PEG 3350
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 90.58 α = 90
    b = 110.25 β = 90
    c = 118.24 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2012-12-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength 0.9763
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.8
    Resolution(Low) 49.96
    Number Reflections(Observed) 110147
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.72
    Redundancy 6.7
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.83
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.9
    Mean I Over Sigma(Observed) 2.0
    Redundancy 6.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.8
    Resolution(Low) 50.01
    Number of Reflections(Observed) 104567
    Number of Reflections(R-Free) 5494
    Percent Reflections(Observed) 99.97
    R-Factor(Observed) 0.17741
    R-Work 0.17599
    R-Free 0.20435
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 32.803
    Anisotropic B[1][1] -1.69
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.05
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.74
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8
    Shell Resolution(Low) 1.847
    Number of Reflections(R-Free) 391
    Number of Reflections(R-Work) 7693
    R-Factor(R-Work) 0.26
    R-Factor(R-Free) 0.288
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scbond_it 2.559
    r_mcangle_it 2.632
    r_mcbond_other 1.843
    r_mcbond_it 1.845
    r_gen_planes_other 0.005
    r_gen_planes_refined 0.009
    r_chiral_restr 0.097
    r_dihedral_angle_4_deg 18.821
    r_dihedral_angle_3_deg 11.83
    r_dihedral_angle_2_deg 36.318
    r_dihedral_angle_1_deg 5.889
    r_angle_other_deg 1.081
    r_angle_refined_deg 1.533
    r_bond_other_d 0.005
    r_bond_refined_d 0.014
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7027
    Nucleic Acid Atoms 0
    Heterogen Atoms 80
    Solvent Atoms 549
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) AIMLESS
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.7.0032
    model building PHASER