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X-RAY DIFFRACTION
Materials and Methods page
3ZLC
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.2 M NH4NO3, 16 % PEG 3350
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.78 α = 90
    b = 76.93 β = 104.77
    c = 65.12 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 210)
    Type ADSC
    Collection Date 2012-06-25
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-1
    Wavelength 0.934
    Site ESRF
    Beamline ID14-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2
    Resolution(Low) 48.14
    Number Reflections(Observed) 31843
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.05
    B(Isotropic) From Wilson Plot 23.16
    Redundancy 3.9
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.1
    Percent Possible(All) 92.2
    R Merge I(Observed) 0.27
    Mean I Over Sigma(Observed) 4.41
    Redundancy 3.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.999
    Resolution(Low) 48.14
    Cut-off Sigma(F) 2.0
    Number of Reflections(Observed) 31839
    Number of Reflections(R-Free) 1999
    Percent Reflections(Observed) 98.8
    R-Factor(Observed) 0.1675
    R-Work 0.1648
    R-Free 0.2061
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.4
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.999
    Shell Resolution(Low) 2.049
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 1912
    R-Factor(R-Work) 0.1918
    R-Factor(R-Free) 0.2326
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.049
    Shell Resolution(Low) 2.1044
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2111
    R-Factor(R-Work) 0.1758
    R-Factor(R-Free) 0.2235
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1044
    Shell Resolution(Low) 2.1664
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2159
    R-Factor(R-Work) 0.1671
    R-Factor(R-Free) 0.2247
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1664
    Shell Resolution(Low) 2.2363
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2148
    R-Factor(R-Work) 0.1571
    R-Factor(R-Free) 0.2213
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2363
    Shell Resolution(Low) 2.3162
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2122
    R-Factor(R-Work) 0.1605
    R-Factor(R-Free) 0.1999
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3162
    Shell Resolution(Low) 2.409
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2162
    R-Factor(R-Work) 0.1629
    R-Factor(R-Free) 0.2011
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.409
    Shell Resolution(Low) 2.5186
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2138
    R-Factor(R-Work) 0.1664
    R-Factor(R-Free) 0.2098
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5186
    Shell Resolution(Low) 2.6514
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2161
    R-Factor(R-Work) 0.1664
    R-Factor(R-Free) 0.2272
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6514
    Shell Resolution(Low) 2.8175
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2139
    R-Factor(R-Work) 0.1775
    R-Factor(R-Free) 0.2768
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8175
    Shell Resolution(Low) 3.035
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2142
    R-Factor(R-Work) 0.1752
    R-Factor(R-Free) 0.2012
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.035
    Shell Resolution(Low) 3.3403
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2162
    R-Factor(R-Work) 0.1695
    R-Factor(R-Free) 0.2077
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3403
    Shell Resolution(Low) 3.8235
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2167
    R-Factor(R-Work) 0.1492
    R-Factor(R-Free) 0.1871
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8235
    Shell Resolution(Low) 4.8165
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2148
    R-Factor(R-Work) 0.1416
    R-Factor(R-Free) 0.1745
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8165
    Shell Resolution(Low) 48.1537
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2169
    R-Factor(R-Work) 0.1858
    R-Factor(R-Free) 0.2087
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.09
    f_dihedral_angle_d 15.855
    f_angle_d 1.213
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3553
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 240
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER