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X-RAY DIFFRACTION
Materials and Methods page
3ZKR
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 105.11 α = 90
    b = 266.25 β = 109.78
    c = 110.75 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Collection Date 2011-09-10
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength 0.9193
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.1
    Resolution(High) 3.65
    Resolution(Low) 44.08
    Number Reflections(Observed) 62852
    Percent Possible(Observed) 98.9
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 105.99
    Redundancy 3.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.649
    Resolution(Low) 44.083
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 62779
    Number of Reflections(R-Free) 3185
    Percent Reflections(Observed) 98.88
    R-Factor(Observed) 0.2305
    R-Work 0.2287
    R-Free 0.2639
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6485
    Shell Resolution(Low) 3.703
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2345
    R-Factor(R-Work) 0.3321
    R-Factor(R-Free) 0.3339
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.703
    Shell Resolution(Low) 3.7608
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.3144
    R-Factor(R-Free) 0.3488
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7608
    Shell Resolution(Low) 3.8224
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2601
    R-Factor(R-Work) 0.285
    R-Factor(R-Free) 0.3105
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8224
    Shell Resolution(Low) 3.8883
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2590
    R-Factor(R-Work) 0.2783
    R-Factor(R-Free) 0.3048
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8883
    Shell Resolution(Low) 3.9589
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2600
    R-Factor(R-Work) 0.266
    R-Factor(R-Free) 0.3053
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9589
    Shell Resolution(Low) 4.035
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2642
    R-Factor(R-Work) 0.255
    R-Factor(R-Free) 0.2914
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.035
    Shell Resolution(Low) 4.1173
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2587
    R-Factor(R-Work) 0.2538
    R-Factor(R-Free) 0.3024
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1173
    Shell Resolution(Low) 4.2068
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2603
    R-Factor(R-Work) 0.238
    R-Factor(R-Free) 0.2658
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2068
    Shell Resolution(Low) 4.3046
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2606
    R-Factor(R-Work) 0.2265
    R-Factor(R-Free) 0.2738
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3046
    Shell Resolution(Low) 4.4121
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2620
    R-Factor(R-Work) 0.2202
    R-Factor(R-Free) 0.2677
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4121
    Shell Resolution(Low) 4.5313
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2584
    R-Factor(R-Work) 0.2066
    R-Factor(R-Free) 0.2165
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5313
    Shell Resolution(Low) 4.6645
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.1939
    R-Factor(R-Free) 0.2298
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6645
    Shell Resolution(Low) 4.8149
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2637
    R-Factor(R-Work) 0.1913
    R-Factor(R-Free) 0.2479
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8149
    Shell Resolution(Low) 4.9868
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2625
    R-Factor(R-Work) 0.205
    R-Factor(R-Free) 0.2159
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.9868
    Shell Resolution(Low) 5.1861
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2603
    R-Factor(R-Work) 0.1943
    R-Factor(R-Free) 0.2162
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1861
    Shell Resolution(Low) 5.4218
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2602
    R-Factor(R-Work) 0.2017
    R-Factor(R-Free) 0.2755
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4218
    Shell Resolution(Low) 5.707
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.2151
    R-Factor(R-Free) 0.2457
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.707
    Shell Resolution(Low) 6.0638
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2612
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.267
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.0638
    Shell Resolution(Low) 6.5306
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2642
    R-Factor(R-Work) 0.2236
    R-Factor(R-Free) 0.2439
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.5306
    Shell Resolution(Low) 7.1852
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2543
    R-Factor(R-Work) 0.2344
    R-Factor(R-Free) 0.2683
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.1852
    Shell Resolution(Low) 8.2191
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2588
    R-Factor(R-Work) 0.2232
    R-Factor(R-Free) 0.2497
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 8.2191
    Shell Resolution(Low) 10.3332
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2522
    R-Factor(R-Work) 0.1863
    R-Factor(R-Free) 0.1891
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 10.3332
    Shell Resolution(Low) 44.0864
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2564
    R-Factor(R-Work) 0.2617
    R-Factor(R-Free) 0.3258
    Percent Reflections(Observed) 96.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.009
    f_chiral_restr 0.102
    f_dihedral_angle_d 16.725
    f_angle_d 1.335
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 25020
    Nucleic Acid Atoms 0
    Heterogen Atoms 22
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)