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X-RAY DIFFRACTION
Materials and Methods page
3ZJX
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.85 M AMMONIUM DIHYDROGEN PHOSPHATE AND 0.5% (W/V) OCTYLGLUCOSIDE
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 123.71 α = 90
    b = 123.71 β = 90
    c = 127.31 γ = 120
     
    Space Group
    Space Group Name:    P 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (SATURN 944)
    Type RIGAKU
    Collection Date 2012-09-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Wavelength 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 2.4
    Resolution(Low) 21.56
    Number Reflections(Observed) 85072
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.06
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 2.4
    Resolution(Low) 2.49
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.44
    Mean I Over Sigma(Observed) 1.2
    Redundancy 2.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.4
    Resolution(Low) 21.56
    Number of Reflections(Observed) 80521
    Number of Reflections(R-Free) 4258
    Percent Reflections(Observed) 99.48
    R-Factor(Observed) 0.24817
    R-Work 0.2467
    R-Free 0.27543
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 52.565
    Anisotropic B[1][1] 11.39
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 11.39
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -22.78
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4
    Shell Resolution(Low) 2.462
    Number of Reflections(R-Free) 346
    Number of Reflections(R-Work) 5890
    R-Factor(R-Work) 0.708
    R-Factor(R-Free) 0.632
    Percent Reflections(Observed) 98.66
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scbond_it 3.139
    r_mcangle_it 4.358
    r_mcbond_other 2.862
    r_mcbond_it 2.862
    r_gen_planes_other 0.002
    r_gen_planes_refined 0.005
    r_chiral_restr 0.08
    r_dihedral_angle_4_deg 22.391
    r_dihedral_angle_3_deg 15.696
    r_dihedral_angle_2_deg 39.3
    r_dihedral_angle_1_deg 6.233
    r_angle_other_deg 0.908
    r_angle_refined_deg 1.384
    r_bond_other_d 0.003
    r_bond_refined_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8443
    Nucleic Acid Atoms 0
    Heterogen Atoms 100
    Solvent Atoms 459
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) D*TREK
    Data Reduction (data scaling) D*TREK
    Structure Solution PHESER MR
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.7.0032
    model building PHESER version: MR