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X-RAY DIFFRACTION
Materials and Methods page
3ZIY
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details PEG, SODIUM CITRITE, pH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 128.18 α = 90
    b = 128.18 β = 90
    c = 86.31 γ = 120
     
    Space Group
    Space Group Name:    H 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Details MIRRORS
    Collection Date 2012-10-04
     
    Diffraction Radiation
    Monochromator SI111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength 0.98
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.01
    Resolution(Low) 40
    Number Reflections(Observed) 277728
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 6.4
    Redundancy 4.3
     
    High Resolution Shell Details
    Resolution(High) 1.01
    Resolution(Low) 1.05
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.62
    Mean I Over Sigma(Observed) 2.0
    Redundancy 3.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.01
    Resolution(Low) 37.76
    Number of Reflections(Observed) 263699
    Number of Reflections(R-Free) 14029
    Percent Reflections(Observed) 99.91
    R-Factor(Observed) 0.10962
    R-Work 0.10898
    R-Free 0.12182
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 12.6
    Anisotropic B[1][1] -0.01
    Anisotropic B[1][2] -0.01
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.02
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.009
    Shell Resolution(Low) 1.036
    Number of Reflections(R-Free) 1044
    Number of Reflections(R-Work) 19303
    R-Factor(R-Work) 0.285
    R-Factor(R-Free) 0.301
    Percent Reflections(Observed) 99.18
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 9.78
    r_sphericity_free 45.916
    r_rigid_bond_restr 4.678
    r_gen_planes_other 0.018
    r_gen_planes_refined 0.013
    r_chiral_restr 0.117
    r_dihedral_angle_4_deg 20.71
    r_dihedral_angle_3_deg 12.101
    r_dihedral_angle_2_deg 39.116
    r_dihedral_angle_1_deg 6.782
    r_angle_other_deg 2.207
    r_angle_refined_deg 1.855
    r_bond_other_d 0.001
    r_bond_refined_d 0.016
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3440
    Nucleic Acid Atoms 0
    Heterogen Atoms 45
    Solvent Atoms 794
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL2000
    Data Reduction (data scaling) HKL2000
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building MOLREP