X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details pH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 102.71 α = 90
b = 104.9 β = 103.71
c = 171.84 γ = 90
Symmetry
Space Group P 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS MIRRORS 2012-06-06
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA -- SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.55 50 98.1 0.1 -- -- 2.3 -- 113422 -- -3.0 51.12
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.55 2.62 94.3 1.08 -- 0.94 2.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.55 49.16 -- 0.0 -- 113420 1780 98.03 -- 0.1956 0.1952 0.2176 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.55 2.62 -- 132 7797 0.2414 0.241 -- 98.03
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 58.47
Anisotropic B[1][1] -0.1093
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0861
Anisotropic B[2][2] 6.2526
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -6.1433
RMS Deviations
Key Refinement Restraint Deviation
t_angle_deg 1.14
t_omega_torsion 2.94
t_bond_d 0.009
t_other_torsion 18.01
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.387
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 24641
Nucleic Acid Atoms 0
Heterogen Atoms 40
Solvent Atoms 222

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.0
XDS data reduction
XSCALE data scaling
PHASER phasing