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X-RAY DIFFRACTION
Materials and Methods page
3ZH3
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 50 MM CALCIUM CHLORIDE, 100 MM HEPES, PH 7.5, 24% PEG 4000
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 46.62 α = 90
    b = 81.11 β = 90
    c = 104.88 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 2M)
    Type DECTRIS
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength 1.0000
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.9
    Resolution(High) 2.9
    Resolution(Low) 44
    Number Reflections(Observed) 9295
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.27
    Redundancy 6.5
     
    High Resolution Shell Details
    Resolution(High) 2.9
    Resolution(Low) 3.06
    Percent Possible(All) 100.0
    Mean I Over Sigma(Observed) 1.9
    Redundancy 6.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.9
    Resolution(Low) 44.038
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 9288
    Number of Reflections(R-Free) 444
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.1868
    R-Work 0.184
    R-Free 0.2423
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9003
    Shell Resolution(Low) 3.3199
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2878
    R-Factor(R-Work) 0.2429
    R-Factor(R-Free) 0.3311
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3199
    Shell Resolution(Low) 4.1822
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2903
    R-Factor(R-Work) 0.1718
    R-Factor(R-Free) 0.2438
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1822
    Shell Resolution(Low) 44.0435
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 3063
    R-Factor(R-Work) 0.1653
    R-Factor(R-Free) 0.1977
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.032
    f_dihedral_angle_d 9.561
    f_angle_d 0.504
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3118
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 14
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER