X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.5
Details 8 % ISOPROPANOL, 20 MM MAGNESIUM CHLORIDE AND 50 MM MES PH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 107.43 α = 90
b = 107.43 β = 90
c = 102.82 γ = 90
Symmetry
Space Group P 43

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL (PILATUS 6M) DECTRIS -- 2011-12-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.4 75.97 99.9 0.09 -- -- 9.5 -- 16156 -- 3.3 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.4 3.58 99.2 0.58 -- 3.3 9.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.4 75.968 -- 1.99 -- 16156 1581 99.72 -- 0.2418 0.243 0.277 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.402 3.5118 -- 142 2661 0.302 0.3146 -- 93.0
X Ray Diffraction 3.5118 3.6373 -- 143 2729 0.2899 0.3016 -- 95.0
X Ray Diffraction 3.6373 3.7829 -- 144 2719 0.2805 0.3239 -- 95.0
X Ray Diffraction 3.7829 3.9551 -- 145 2731 0.269 0.3663 -- 95.0
X Ray Diffraction 3.9551 4.1636 -- 143 2730 0.2623 0.2914 -- 95.0
X Ray Diffraction 4.1636 4.4244 -- 144 2707 0.2469 0.2687 -- 95.0
X Ray Diffraction 4.4244 4.766 -- 144 2746 0.2197 0.2745 -- 95.0
X Ray Diffraction 4.766 5.2455 -- 145 2698 0.2168 0.2326 -- 95.0
X Ray Diffraction 5.2455 6.0043 -- 145 2738 0.2452 0.3261 -- 95.0
X Ray Diffraction 6.0043 7.5636 -- 144 2719 0.2595 0.3282 -- 95.0
X Ray Diffraction 7.5636 74.3007 -- 140 2736 0.2024 0.2126 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.11
f_dihedral_angle_d 19.439
f_angle_d 1.573
f_bond_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6349
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 0

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHENIX Structure Solution
PHENIX (PHENIX.REFINE) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE) refinement
PHENIX model building