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X-RAY DIFFRACTION
Materials and Methods page
3ZGQ
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details pH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 63.83 α = 90
    b = 71.79 β = 90
    c = 116.92 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD (QUANTUM 315R)
    Type ADSC
    Details DOUBLE CRYSTAL SI(111)
     
    Diffraction Radiation
    Monochromator DOUBLE FLAT CRYSTAL, SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.3.1
    Wavelength 1.1111
    Site ALS
    Beamline 8.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.2
    Resolution(Low) 47.7
    Number Reflections(Observed) 27780
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 27.28
    Redundancy 4.0
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.24
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.7
    Mean I Over Sigma(Observed) 2.0
    Redundancy 4.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.203
    Resolution(Low) 47.704
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 27780
    Number of Reflections(R-Free) 2000
    Percent Reflections(Observed) 99.77
    R-Factor(Observed) 0.1821
    R-Work 0.1778
    R-Free 0.2398
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2034
    Shell Resolution(Low) 2.2585
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1764
    R-Factor(R-Work) 0.2221
    R-Factor(R-Free) 0.2509
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2585
    Shell Resolution(Low) 2.3195
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1816
    R-Factor(R-Work) 0.2185
    R-Factor(R-Free) 0.283
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3195
    Shell Resolution(Low) 2.3878
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1810
    R-Factor(R-Work) 0.2046
    R-Factor(R-Free) 0.2954
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3878
    Shell Resolution(Low) 2.4649
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1833
    R-Factor(R-Work) 0.1982
    R-Factor(R-Free) 0.2822
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4649
    Shell Resolution(Low) 2.553
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1823
    R-Factor(R-Work) 0.19
    R-Factor(R-Free) 0.2749
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.553
    Shell Resolution(Low) 2.6552
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1824
    R-Factor(R-Work) 0.19
    R-Factor(R-Free) 0.2752
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6552
    Shell Resolution(Low) 2.776
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1819
    R-Factor(R-Work) 0.1937
    R-Factor(R-Free) 0.3001
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.776
    Shell Resolution(Low) 2.9223
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1831
    R-Factor(R-Work) 0.1858
    R-Factor(R-Free) 0.2543
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9223
    Shell Resolution(Low) 3.1054
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1829
    R-Factor(R-Work) 0.1887
    R-Factor(R-Free) 0.2755
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1054
    Shell Resolution(Low) 3.3451
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1845
    R-Factor(R-Work) 0.1827
    R-Factor(R-Free) 0.266
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3451
    Shell Resolution(Low) 3.6816
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1852
    R-Factor(R-Work) 0.1593
    R-Factor(R-Free) 0.2321
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6816
    Shell Resolution(Low) 4.2141
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1863
    R-Factor(R-Work) 0.1466
    R-Factor(R-Free) 0.1966
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2141
    Shell Resolution(Low) 5.3082
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1888
    R-Factor(R-Work) 0.1556
    R-Factor(R-Free) 0.1739
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3082
    Shell Resolution(Low) 47.7149
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 1983
    R-Factor(R-Work) 0.1834
    R-Factor(R-Free) 0.2332
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.08
    f_dihedral_angle_d 15.72
    f_angle_d 1.121
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3885
    Nucleic Acid Atoms 0
    Heterogen Atoms 7
    Solvent Atoms 232
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL2000
    Data Reduction (data scaling) HKL2000
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)