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X-RAY DIFFRACTION
Materials and Methods page
3ZF0
  •   Crystallization Hide
    Crystallization Experiments
    Details 2-8% TERT-BUTANOL, 0.1M TRIS (PH 8.5), 30-50% MPD OR PEG400.
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 87.12 α = 90
    b = 87.12 β = 90
    c = 87.12 γ = 90
     
    Space Group
    Space Group Name:    P 21 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04-1
    Wavelength 0.9334
    Site DIAMOND
    Beamline I04-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.9
    Resolution(Low) 50.3
    Number Reflections(Observed) 5103
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.07
    Redundancy 7.5
     
    High Resolution Shell Details
    Resolution(High) 2.9
    Resolution(Low) 3.06
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.35
    Mean I Over Sigma(Observed) 2.1
    Redundancy 8.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.9
    Resolution(Low) 50.3
    Number of Reflections(Observed) 5015
    Number of Reflections(R-Free) 60
    Percent Reflections(Observed) 99.86
    R-Factor(Observed) 0.24255
    R-Work 0.24218
    R-Free 0.27463
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 83.174
    Anisotropic B[1][1] -11.49
    Anisotropic B[1][2] 5.79
    Anisotropic B[1][3] -6.17
    Anisotropic B[2][2] 4.11
    Anisotropic B[2][3] -7.9
    Anisotropic B[3][3] 7.38
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.902
    Shell Resolution(Low) 2.977
    Number of Reflections(R-Free) 8
    Number of Reflections(R-Work) 358
    R-Factor(R-Work) 0.411
    R-Factor(R-Free) 0.437
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scbond_it 2.757
    r_mcangle_it 3.877
    r_mcbond_it 2.266
    r_gen_planes_refined 0.004
    r_chiral_restr 0.058
    r_dihedral_angle_4_deg 12.892
    r_dihedral_angle_3_deg 17.94
    r_dihedral_angle_2_deg 36.711
    r_dihedral_angle_1_deg 4.756
    r_angle_refined_deg 0.996
    r_bond_refined_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1165
    Nucleic Acid Atoms 0
    Heterogen Atoms 30
    Solvent Atoms 28
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.7.0032