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X-RAY DIFFRACTION
Materials and Methods page
3ZDL
  •   Crystallization Hide
    Crystallization Experiments
    Details 1.2M AMMONIUM SULPHATE, 0.05M TRI-SODIUM CITRATE, 3% ISOPROPANOL
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 51.73 α = 90
    b = 70.03 β = 90
    c = 95.6 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2011-10-07
     
    Diffraction Radiation
    Monochromator ACCEL FIXED EXIT DOUBLE CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I24
    Wavelength 0.9778
    Site DIAMOND
    Beamline I24
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.9
    Resolution(High) 2.3
    Resolution(Low) 56.49
    Number Reflections(Observed) 16055
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.11
    B(Isotropic) From Wilson Plot 34.31
    Redundancy 5.6
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.42
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.87
    Mean I Over Sigma(Observed) 3.0
    Redundancy 5.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 47.8
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 16016
    Number of Reflections(R-Free) 801
    Percent Reflections(Observed) 99.88
    R-Factor(Observed) 0.1901
    R-Work 0.1881
    R-Free 0.2298
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.4441
    Number of Reflections(R-Free) 109
    Number of Reflections(R-Work) 2491
    R-Factor(R-Work) 0.2423
    R-Factor(R-Free) 0.349
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4441
    Shell Resolution(Low) 2.6328
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2487
    R-Factor(R-Work) 0.2094
    R-Factor(R-Free) 0.2582
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6328
    Shell Resolution(Low) 2.8977
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2494
    R-Factor(R-Work) 0.1991
    R-Factor(R-Free) 0.2492
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8977
    Shell Resolution(Low) 3.317
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2516
    R-Factor(R-Work) 0.1831
    R-Factor(R-Free) 0.2637
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.317
    Shell Resolution(Low) 4.1786
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2552
    R-Factor(R-Work) 0.1676
    R-Factor(R-Free) 0.1895
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1786
    Shell Resolution(Low) 47.8104
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2675
    R-Factor(R-Work) 0.1844
    R-Factor(R-Free) 0.208
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.064
    f_dihedral_angle_d 15.857
    f_angle_d 1.09
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2204
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 57
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) IMOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE: 1.8_1069)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE: 1.8_1069)
    model building PHASER