POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
3ZDK
  •   Crystallization Hide
    Crystallization Experiments
    Details 0.4M K/NA(TART)
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 143.09 α = 90
    b = 143.09 β = 90
    c = 143.09 γ = 90
     
    Space Group
    Space Group Name:    P 41 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL (PILATUS 6M)
    Type DECTRIS
    Collection Date 2012-01-30
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I24
    Wavelength 0.96860
    Site DIAMOND
    Beamline I24
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.9
    Resolution(High) 2.16
    Resolution(Low) 71.55
    Number Reflections(Observed) 27494
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.22
    Redundancy 18.4
     
    High Resolution Shell Details
    Resolution(High) 2.16
    Resolution(Low) 2.28
    Percent Possible(All) 100.0
    Mean I Over Sigma(Observed) 1.9
    Redundancy 14.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.16
    Resolution(Low) 50.64
    Number of Reflections(Observed) 26072
    Number of Reflections(R-Free) 1362
    Percent Reflections(Observed) 99.94
    R-Factor(Observed) 0.17218
    R-Work 0.17029
    R-Free 0.20861
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.771
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.16
    Shell Resolution(Low) 2.216
    Number of Reflections(R-Free) 100
    Number of Reflections(R-Work) 1892
    R-Factor(R-Work) 0.276
    R-Factor(R-Free) 0.287
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scbond_it 5.437
    r_mcangle_it 5.499
    r_mcbond_other 4.028
    r_mcbond_it 4.066
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.008
    r_chiral_restr 0.087
    r_dihedral_angle_4_deg 23.055
    r_dihedral_angle_3_deg 12.095
    r_dihedral_angle_2_deg 30.742
    r_dihedral_angle_1_deg 6.512
    r_angle_other_deg 0.783
    r_angle_refined_deg 1.556
    r_bond_other_d 0.001
    r_bond_refined_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2442
    Nucleic Acid Atoms 0
    Heterogen Atoms 45
    Solvent Atoms 240
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.7.0032
    model building PHASER