X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 177.21 α = 90
b = 148.11 β = 98.54
c = 92.25 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2012-11-02
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.97910 Photon Factory BL-17A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.3 20 -- -- -- -- -- -- 27238 -- -- 62.78

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.311 19.861 -- 1.99 -- 27165 1363 77.76 -- 0.2311 0.2287 0.2757 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.3113 3.429 -- 21 260 0.2543 0.2486 -- 8.0
X Ray Diffraction 3.429 3.5656 -- 52 842 0.2631 0.3572 -- 26.0
X Ray Diffraction 3.5656 3.7269 -- 105 1948 0.2627 0.2766 -- 59.0
X Ray Diffraction 3.7269 3.9219 -- 145 2926 0.2531 0.3123 -- 89.0
X Ray Diffraction 3.9219 4.1655 -- 168 3308 0.2329 0.266 -- 100.0
X Ray Diffraction 4.1655 4.4837 -- 183 3331 0.2207 0.2837 -- 100.0
X Ray Diffraction 4.4837 4.9287 -- 158 3328 0.2222 0.2625 -- 100.0
X Ray Diffraction 4.9287 5.6276 -- 183 3304 0.2225 0.2749 -- 100.0
X Ray Diffraction 5.6276 7.0374 -- 167 3356 0.2477 0.3051 -- 100.0
X Ray Diffraction 7.0374 19.861 -- 181 3199 0.2011 0.2448 -- 95.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 113.795
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.034
f_dihedral_angle_d 13.073
f_plane_restr 0.003
f_angle_d 0.718
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7021
Nucleic Acid Atoms 3130
Heterogen Atoms 20
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (phenix.refine: 1.8.2_1309)