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X-RAY DIFFRACTION
Materials and Methods page
3WFS
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 177.21 α = 90
    b = 148.11 β = 98.54
    c = 92.25 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Detector
    Collection Date 2012-11-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-17A
    Wavelength List 0.97910
    Site PHOTON FACTORY
    Beamline BL-17A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.3
    Resolution(Low) 20
    Number Reflections(Observed) 27238
    B(Isotropic) From Wilson Plot 62.78
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.311
    Resolution(Low) 19.861
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 27165
    Number of Reflections(R-Free) 1363
    Percent Reflections(Observed) 77.76
    R-Factor(Observed) 0.2311
    R-Work 0.2287
    R-Free 0.2757
     
    Temperature Factor Modeling
    Mean Isotropic B Value 113.795
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3113
    Shell Resolution(Low) 3.429
    Number of Reflections(R-Free) 21
    Number of Reflections(R-Work) 260
    R-Factor(R-Work) 0.2543
    R-Factor(R-Free) 0.2486
    Percent Reflections(Observed) 8.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.429
    Shell Resolution(Low) 3.5656
    Number of Reflections(R-Free) 52
    Number of Reflections(R-Work) 842
    R-Factor(R-Work) 0.2631
    R-Factor(R-Free) 0.3572
    Percent Reflections(Observed) 26.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5656
    Shell Resolution(Low) 3.7269
    Number of Reflections(R-Free) 105
    Number of Reflections(R-Work) 1948
    R-Factor(R-Work) 0.2627
    R-Factor(R-Free) 0.2766
    Percent Reflections(Observed) 59.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7269
    Shell Resolution(Low) 3.9219
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2926
    R-Factor(R-Work) 0.2531
    R-Factor(R-Free) 0.3123
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9219
    Shell Resolution(Low) 4.1655
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 3308
    R-Factor(R-Work) 0.2329
    R-Factor(R-Free) 0.266
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1655
    Shell Resolution(Low) 4.4837
    Number of Reflections(R-Free) 183
    Number of Reflections(R-Work) 3331
    R-Factor(R-Work) 0.2207
    R-Factor(R-Free) 0.2837
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4837
    Shell Resolution(Low) 4.9287
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 3328
    R-Factor(R-Work) 0.2222
    R-Factor(R-Free) 0.2625
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.9287
    Shell Resolution(Low) 5.6276
    Number of Reflections(R-Free) 183
    Number of Reflections(R-Work) 3304
    R-Factor(R-Work) 0.2225
    R-Factor(R-Free) 0.2749
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6276
    Shell Resolution(Low) 7.0374
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 3356
    R-Factor(R-Work) 0.2477
    R-Factor(R-Free) 0.3051
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.0374
    Shell Resolution(Low) 19.861
    Number of Reflections(R-Free) 181
    Number of Reflections(R-Work) 3199
    R-Factor(R-Work) 0.2011
    R-Factor(R-Free) 0.2448
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.073
    f_plane_restr 0.003
    f_chiral_restr 0.034
    f_angle_d 0.718
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7021
    Nucleic Acid Atoms 3130
    Heterogen Atoms 20
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.2_1309)