X-RAY DIFFRACTION Experimental Data & Validation


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Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 95.97 α = 90
b = 154.03 β = 107.92
c = 158.35 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2013-05-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98000 PHOTON FACTORY BL-17A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.6 20 -- -- -- -- -- -- 27296 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.619 19.982 -- 1.99 -- 27048 1361 54.32 -- 0.2249 0.2215 0.2894 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.6187 3.7473 -- 8 170 0.2401 0.5087 -- 4.0
X Ray Diffraction 3.7473 3.8962 -- 37 481 0.2071 0.2794 -- 11.0
X Ray Diffraction 3.8962 4.0721 -- 39 1040 0.2267 0.2636 -- 22.0
X Ray Diffraction 4.0721 4.2848 -- 95 1671 0.2224 0.2839 -- 36.0
X Ray Diffraction 4.2848 4.5503 -- 119 2233 0.2009 0.2712 -- 47.0
X Ray Diffraction 4.5503 4.8969 -- 148 2800 0.2086 0.2649 -- 60.0
X Ray Diffraction 4.8969 5.3809 -- 173 3452 0.2082 0.2919 -- 73.0
X Ray Diffraction 5.3809 6.1397 -- 230 4326 0.2544 0.3056 -- 92.0
X Ray Diffraction 6.1397 7.6622 -- 253 4749 0.2545 0.3462 -- 100.0
X Ray Diffraction 7.6622 19.982 -- 259 4765 0.2047 0.2647 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 147.069
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 12.236
f_plane_restr 0.004
f_chiral_restr 0.051
f_angle_d 0.804
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13958
Nucleic Acid Atoms 6180
Heterogen Atoms 0
Solvent Atoms 0

Software

Computing
Computing Package Purpose
XDS Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: 1.8.2_1309) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1389) refinement
PHASER model building
XDS data collection