POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3WFQ
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 95.97 α = 90
    b = 154.03 β = 107.92
    c = 158.35 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Detector
    Collection Date 2013-05-13
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-17A
    Wavelength List 0.98000
    Site PHOTON FACTORY
    Beamline BL-17A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.6
    Resolution(Low) 20
    Number Reflections(Observed) 27296
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.619
    Resolution(Low) 19.982
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 27048
    Number of Reflections(R-Free) 1361
    Percent Reflections(Observed) 54.32
    R-Factor(Observed) 0.2249
    R-Work 0.2215
    R-Free 0.2894
     
    Temperature Factor Modeling
    Mean Isotropic B Value 147.069
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6187
    Shell Resolution(Low) 3.7473
    Number of Reflections(R-Free) 8
    Number of Reflections(R-Work) 170
    R-Factor(R-Work) 0.2401
    R-Factor(R-Free) 0.5087
    Percent Reflections(Observed) 4.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7473
    Shell Resolution(Low) 3.8962
    Number of Reflections(R-Free) 37
    Number of Reflections(R-Work) 481
    R-Factor(R-Work) 0.2071
    R-Factor(R-Free) 0.2794
    Percent Reflections(Observed) 11.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8962
    Shell Resolution(Low) 4.0721
    Number of Reflections(R-Free) 39
    Number of Reflections(R-Work) 1040
    R-Factor(R-Work) 0.2267
    R-Factor(R-Free) 0.2636
    Percent Reflections(Observed) 22.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0721
    Shell Resolution(Low) 4.2848
    Number of Reflections(R-Free) 95
    Number of Reflections(R-Work) 1671
    R-Factor(R-Work) 0.2224
    R-Factor(R-Free) 0.2839
    Percent Reflections(Observed) 36.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2848
    Shell Resolution(Low) 4.5503
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2233
    R-Factor(R-Work) 0.2009
    R-Factor(R-Free) 0.2712
    Percent Reflections(Observed) 47.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5503
    Shell Resolution(Low) 4.8969
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2800
    R-Factor(R-Work) 0.2086
    R-Factor(R-Free) 0.2649
    Percent Reflections(Observed) 60.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8969
    Shell Resolution(Low) 5.3809
    Number of Reflections(R-Free) 173
    Number of Reflections(R-Work) 3452
    R-Factor(R-Work) 0.2082
    R-Factor(R-Free) 0.2919
    Percent Reflections(Observed) 73.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3809
    Shell Resolution(Low) 6.1397
    Number of Reflections(R-Free) 230
    Number of Reflections(R-Work) 4326
    R-Factor(R-Work) 0.2544
    R-Factor(R-Free) 0.3056
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.1397
    Shell Resolution(Low) 7.6622
    Number of Reflections(R-Free) 253
    Number of Reflections(R-Work) 4749
    R-Factor(R-Work) 0.2545
    R-Factor(R-Free) 0.3462
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.6622
    Shell Resolution(Low) 19.982
    Number of Reflections(R-Free) 259
    Number of Reflections(R-Work) 4765
    R-Factor(R-Work) 0.2047
    R-Factor(R-Free) 0.2647
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.236
    f_plane_restr 0.004
    f_chiral_restr 0.051
    f_angle_d 0.804
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13958
    Nucleic Acid Atoms 6180
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XDS
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1389)
    model building PHASER
    data collection XDS