X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 126.91 α = 90
b = 138.36 β = 111.04
c = 147.62 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2010-01-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.00000 PHOTON FACTORY BL-17A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
4 20 -- -- -- -- -- -- 34980 -- -- 68.62

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 4.005 19.969 -- 2.01 -- 34646 1732 86.76 -- 0.2604 0.2575 0.3139 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 4.0051 4.1219 -- 19 366 0.3569 0.4865 -- 12.0
X Ray Diffraction 4.1219 4.2537 -- 63 1198 0.3175 0.4213 -- 38.0
X Ray Diffraction 4.2537 4.4042 -- 139 2880 0.2969 0.3126 -- 91.0
X Ray Diffraction 4.4042 4.5785 -- 160 3161 0.3002 0.3747 -- 100.0
X Ray Diffraction 4.5785 4.7841 -- 175 3138 0.2854 0.3505 -- 100.0
X Ray Diffraction 4.7841 5.0326 -- 159 3153 0.2493 0.3744 -- 100.0
X Ray Diffraction 5.0326 5.3422 -- 182 3167 0.2485 0.3025 -- 100.0
X Ray Diffraction 5.3422 5.7455 -- 156 3145 0.2548 0.2788 -- 100.0
X Ray Diffraction 5.7455 6.3071 -- 185 3157 0.261 0.3316 -- 100.0
X Ray Diffraction 6.3071 7.1824 -- 143 3189 0.2701 0.3238 -- 100.0
X Ray Diffraction 7.1824 8.9131 -- 173 3167 0.232 0.282 -- 100.0
X Ray Diffraction 8.9131 19.9693 -- 178 3193 0.201 0.2375 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 142.666
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 11.049
f_plane_restr 0.003
f_chiral_restr 0.034
f_angle_d 0.781
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 27524
Nucleic Acid Atoms 0
Heterogen Atoms 40
Solvent Atoms 0

Software

Computing
Computing Package Purpose
XDS Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: 1.8.2_1309) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.2_1309) refinement
PHASER model building
XDS data collection