POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3WFO
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 177.48 α = 90
    b = 327.77 β = 90
    c = 78.1 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Detector
    Collection Date 2010-04-26
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-17A
    Wavelength List 0.98000
    Site PHOTON FACTORY
    Beamline BL-17A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.4
    Resolution(Low) 20
    Number Reflections(Observed) 31733
    B(Isotropic) From Wilson Plot 108.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 3.4
    Resolution(Low) 19.878
    Cut-off Sigma(F) 1.33
    Number of Reflections(Observed) 31704
    Number of Reflections(R-Free) 1586
    Percent Reflections(Observed) 99.92
    R-Factor(Observed) 0.1813
    R-Work 0.1797
    R-Free 0.2096
     
    Temperature Factor Modeling
    Mean Isotropic B Value 119.338
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4001
    Shell Resolution(Low) 3.5092
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2656
    R-Factor(R-Work) 0.3299
    R-Factor(R-Free) 0.3447
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5092
    Shell Resolution(Low) 3.6339
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.2659
    R-Factor(R-Free) 0.3269
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6339
    Shell Resolution(Low) 3.7785
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2698
    R-Factor(R-Work) 0.2293
    R-Factor(R-Free) 0.3135
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7785
    Shell Resolution(Low) 3.9492
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2717
    R-Factor(R-Work) 0.186
    R-Factor(R-Free) 0.2195
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9492
    Shell Resolution(Low) 4.1556
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2715
    R-Factor(R-Work) 0.1698
    R-Factor(R-Free) 0.1959
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1556
    Shell Resolution(Low) 4.4133
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2722
    R-Factor(R-Work) 0.1536
    R-Factor(R-Free) 0.2046
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4133
    Shell Resolution(Low) 4.7497
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2723
    R-Factor(R-Work) 0.1503
    R-Factor(R-Free) 0.1659
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7497
    Shell Resolution(Low) 5.2199
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2752
    R-Factor(R-Work) 0.1532
    R-Factor(R-Free) 0.1872
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2199
    Shell Resolution(Low) 5.9573
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2762
    R-Factor(R-Work) 0.1849
    R-Factor(R-Free) 0.2343
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9573
    Shell Resolution(Low) 7.4396
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2779
    R-Factor(R-Work) 0.2004
    R-Factor(R-Free) 0.2268
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.4396
    Shell Resolution(Low) 19.8787
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2880
    R-Factor(R-Work) 0.1574
    R-Factor(R-Free) 0.1668
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.633
    f_plane_restr 0.004
    f_chiral_restr 0.033
    f_angle_d 0.813
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10415
    Nucleic Acid Atoms 0
    Heterogen Atoms 55
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XDS
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: dev_1389)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1389)
    model building PHASER
    data collection XDS