X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 177.48 α = 90
b = 327.77 β = 90
c = 78.1 γ = 90
Symmetry
Space Group C 2 2 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2010-04-26
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98000 PHOTON FACTORY BL-17A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.4 20 -- -- -- -- -- -- 31733 -- -- 108.7

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.4 19.878 -- 1.33 -- 31704 1586 99.92 -- 0.1813 0.1797 0.2096 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.4001 3.5092 -- 140 2656 0.3299 0.3447 -- 100.0
X Ray Diffraction 3.5092 3.6339 -- 142 2714 0.2659 0.3269 -- 100.0
X Ray Diffraction 3.6339 3.7785 -- 142 2698 0.2293 0.3135 -- 100.0
X Ray Diffraction 3.7785 3.9492 -- 144 2717 0.186 0.2195 -- 100.0
X Ray Diffraction 3.9492 4.1556 -- 142 2715 0.1698 0.1959 -- 100.0
X Ray Diffraction 4.1556 4.4133 -- 144 2722 0.1536 0.2046 -- 100.0
X Ray Diffraction 4.4133 4.7497 -- 143 2723 0.1503 0.1659 -- 100.0
X Ray Diffraction 4.7497 5.2199 -- 145 2752 0.1532 0.1872 -- 100.0
X Ray Diffraction 5.2199 5.9573 -- 145 2762 0.1849 0.2343 -- 100.0
X Ray Diffraction 5.9573 7.4396 -- 146 2779 0.2004 0.2268 -- 100.0
X Ray Diffraction 7.4396 19.8787 -- 153 2880 0.1574 0.1668 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 119.338
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 12.633
f_plane_restr 0.004
f_chiral_restr 0.033
f_angle_d 0.813
f_bond_d 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10415
Nucleic Acid Atoms 0
Heterogen Atoms 55
Solvent Atoms 0

Software

Computing
Computing Package Purpose
XDS Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: dev_1389) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1389) refinement
PHASER model building
XDS data collection