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X-RAY DIFFRACTION
Materials and Methods page
3WC1
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, sitting drop
    pH 6
    Temperature 293.0
    Details Bis-Tris propan, CaCl2, PEG3350, pH 6.0, vapor diffusion, sitting drop, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 96.53 α = 90
    b = 96.53 β = 90
    c = 300.39 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX225HE
    Collection Date 2011-11-12
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 0.97906
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 4.18
    Resolution(Low) 48.79
    Number Reflections(Observed) 12539
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.121
    B(Isotropic) From Wilson Plot 168.154
     
    High Resolution Shell Details
    Resolution(High) 4.18
    Resolution(Low) 4.43
    Percent Possible(All) 94.0
    R Merge I(Observed) 0.956
    Mean I Over Sigma(Observed) 2.48
     
     
  •   Refinement Hide
    Refinement Statistics
    reflnsShellList 4.18
    Resolution(Low) 42.952
    Number of Reflections(Observed) 12524
    Number of Reflections(R-Free) 875
    Percent Reflections(Observed) 98.85
    R-Factor(Observed) 0.295
    R-Work 0.2922
    R-Free 0.3348
     
    Temperature Factor Modeling
    Mean Isotropic B Value 135.033
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.18
    Shell Resolution(Low) 4.4405
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 1782
    R-Factor(R-Work) 0.3491
    R-Factor(R-Free) 0.3706
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4405
    Shell Resolution(Low) 4.7829
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 1930
    R-Factor(R-Work) 0.3276
    R-Factor(R-Free) 0.3402
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7829
    Shell Resolution(Low) 5.2635
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1936
    R-Factor(R-Work) 0.3147
    R-Factor(R-Free) 0.3987
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2635
    Shell Resolution(Low) 6.0233
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1968
    R-Factor(R-Work) 0.3146
    R-Factor(R-Free) 0.3542
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.0233
    Shell Resolution(Low) 7.5819
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 1957
    R-Factor(R-Work) 0.313
    R-Factor(R-Free) 0.3166
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.5819
    Shell Resolution(Low) 42.9538
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2076
    R-Factor(R-Work) 0.2588
    R-Factor(R-Free) 0.3161
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.144
    f_plane_restr 0.003
    f_chiral_restr 0.036
    f_angle_d 0.807
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8128
    Nucleic Acid Atoms 3102
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection BSS
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHENIX (phenix.refine: 1.8.2_1309)
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction Xscale