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X-RAY DIFFRACTION
Materials and Methods page
3W5J
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 289.0
    Details 0.2M Ammonium sulphate, 0.1M Bis-Tris pH 5.5, 25 % (w/v) PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.76 α = 90
    b = 84.04 β = 90
    c = 95.45 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2012-04-24
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 23-ID-D
    Wavelength List 1.03320
    Site APS
    Beamline 23-ID-D
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Resolution(High) 1.93
    Resolution(Low) 63.08
    Number Reflections(All) 28390
    Number Reflections(Observed) 28390
    Percent Possible(Observed) 100.0
    B(Isotropic) From Wilson Plot 18.2
    Redundancy 7.1
     
    High Resolution Shell Details
    Resolution(High) 1.93
    Resolution(Low) 2.04
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.796
    Mean I Over Sigma(Observed) 0.9
    R-Sym I(Observed) 0.796
    Redundancy 6.9
    Number Unique Reflections(All) 4084
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.932
    Resolution(Low) 47.72
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 28332
    Number of Reflections(Observed) 28332
    Number of Reflections(R-Free) 1429
    Percent Reflections(Observed) 100.0
    R-Factor(All) 0.1934
    R-Factor(Observed) 0.1934
    R-Work 0.1914
    R-Free 0.2317
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 23.4563
    Anisotropic B[1][1] -0.17
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.17
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.34
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.932
    Shell Resolution(Low) 1.982
    Number of Reflections(Observed) 1964
    Number of Reflections(R-Free) 101
    Number of Reflections(R-Work) 1964
    R-Factor(R-Work) 0.261
    R-Factor(R-Free) 0.303
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.587
    r_scbond_it 2.165
    r_mcangle_it 1.278
    r_mcbond_other 0.155
    r_bond_refined_d 0.012
    r_bond_other_d 0.001
    r_angle_refined_deg 1.306
    r_angle_other_deg 0.867
    r_dihedral_angle_1_deg 5.729
    r_dihedral_angle_2_deg 36.765
    r_dihedral_angle_3_deg 12.817
    r_dihedral_angle_4_deg 9.499
    r_chiral_restr 0.073
    r_gen_planes_refined 0.005
    r_gen_planes_other 0.001
    r_mcbond_it 0.684
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2944
    Nucleic Acid Atoms 0
    Heterogen Atoms 39
    Solvent Atoms 229
     
     
  •   Software and Computing Hide
    Computing
    Data Collection BluIce
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution Phaser MR
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    data reduction SCALA version: 3.3.20