POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3W5I
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 289.0
    Details 1M Ammonium sulphate, 0.1M Bis-Tris pH 5.5, 1% (w/v) PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 100.68 α = 90
    b = 112.53 β = 90
    c = 97.87 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type ADSC QUANTUM 315r
    Collection Date 2011-12-03
     
    Diffraction Radiation
    Monochromator SI VORTEX ES
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.953
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Resolution(High) 2.15
    Resolution(Low) 75.04
    Number Reflections(All) 30386
    Number Reflections(Observed) 30386
    Percent Possible(Observed) 99.5
    B(Isotropic) From Wilson Plot 36.2
    Redundancy 7.0
     
    High Resolution Shell Details
    Resolution(High) 2.15
    Resolution(Low) 2.27
    Percent Possible(All) 99.2
    R Merge I(Observed) 0.717
    Mean I Over Sigma(Observed) 1.1
    R-Sym I(Observed) 0.717
    Redundancy 7.2
    Number Unique Reflections(All) 4371
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.15
    Resolution(Low) 75.03
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 30367
    Number of Reflections(Observed) 30367
    Number of Reflections(R-Free) 1480
    Percent Reflections(Observed) 99.21
    R-Factor(All) 0.2238
    R-Factor(Observed) 0.2238
    R-Work 0.2219
    R-Free 0.2616
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 37.4447
    Anisotropic B[1][1] -1.1
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.07
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.03
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.15
    Shell Resolution(Low) 2.206
    Number of Reflections(Observed) 2101
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2101
    R-Factor(R-Work) 0.283
    R-Factor(R-Free) 0.322
    Percent Reflections(Observed) 98.93
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.766
    r_scbond_it 1.65
    r_mcangle_it 1.18
    r_mcbond_other 0.094
    r_bond_refined_d 0.009
    r_bond_other_d 0.001
    r_angle_refined_deg 1.097
    r_angle_other_deg 0.822
    r_dihedral_angle_1_deg 5.461
    r_dihedral_angle_2_deg 37.532
    r_dihedral_angle_3_deg 13.786
    r_dihedral_angle_4_deg 17.544
    r_chiral_restr 0.062
    r_gen_planes_refined 0.004
    r_gen_planes_other 0.001
    r_mcbond_it 0.62
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3016
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 107
     
     
  •   Software and Computing Hide
    Computing
    Data Collection BluIce
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    molecular replacement Phaser
    data reduction SCALA version: 3.3.16