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X-RAY DIFFRACTION
Materials and Methods page
3W11
  •   Crystallization Hide
    Crystallization Experiments
    pH 8
    Details 0.9-1.1M TRI-SODIUM CITRATE, 0.1M IMIDAZOLE-HCL, 0.02% SODIUM AZIDE, PH 8.0
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 168.91 α = 90
    b = 168.91 β = 90
    c = 168.91 γ = 90
     
    Space Group
    Space Group Name:    P 2 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2012-02-05
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 1.0
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 3.9
    Resolution(Low) 46.8
    Number Reflections(Observed) 14689
    Percent Possible(Observed) 98.3
    R Merge I(Observed) 0.089
    B(Isotropic) From Wilson Plot 165.961
     
    High Resolution Shell Details
    Resolution(High) 3.9
    Resolution(Low) 4.0
    Percent Possible(All) 99.5
    R Merge I(Observed) 1.57
    Mean I Over Sigma(Observed) 1.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.9
    Resolution(Low) 46.8
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 14689
    Number of Reflections(R-Free) 719
    Percent Reflections(Observed) 98.43
    R-Factor(Observed) 0.2655
    R-Work 0.2642
    R-Free 0.2921
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 228.987
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9
    Shell Resolution(Low) 4.21
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2875
    R-Factor(R-Work) 0.2536
    R-Factor(R-Free) 0.2888
    Percent Reflections(Observed) 98.43
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 17.75
    t_omega_torsion 3.61
    t_angle_deg 1.37
    t_bond_d 0.011
     
    Coordinate Error
    Luzzati ESD(Observed) 1.71
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4466
    Nucleic Acid Atoms 0
    Heterogen Atoms 131
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement BUSTER 2.10.0
     
    Software
    data extraction pdb_extract version: 3.11
    refinement BUSTER-TNT version: BUSTER 2.10.0
    data reduction Xscale