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X-RAY DIFFRACTION
Materials and Methods page
3W06
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 293.0
    Details 1.0M AMMONIUM SULFATE, 0.2M BICINE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 50.95 α = 90
    b = 55.6 β = 115.81
    c = 53.13 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX225HE
    Details mirrors
    Collection Date 2011-05-18
     
    Diffraction Radiation
    Monochromator Rotated-inclined double-crystal monochromator , Si (111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 0.90
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.15
    Resolution(Low) 50
    Number Reflections(All) 94807
    Number Reflections(Observed) 90920
    Percent Possible(Observed) 95.9
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 1.15
    Resolution(Low) 1.19
    Percent Possible(All) 93.1
    Mean I Over Sigma(Observed) 2.9
    R-Sym I(Observed) 0.535
    Redundancy 3.1
    Number Unique Reflections(All) 8782
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.15
    Resolution(Low) 47.83
    Number of Reflections(Observed) 86188
    Number of Reflections(R-Free) 4538
    Percent Reflections(Observed) 95.74
    R-Factor(Observed) 0.13313
    R-Work 0.13159
    R-Free 0.1621
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.826
    Anisotropic B[1][1] -0.03
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.01
    Anisotropic B[2][2] 0.1
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.08
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.15
    Shell Resolution(Low) 1.18
    Number of Reflections(Observed) 6117
    Number of Reflections(R-Free) 312
    Number of Reflections(R-Work) 6117
    R-Factor(R-Work) 0.195
    R-Factor(R-Free) 0.239
    Percent Reflections(Observed) 91.82
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_rigid_bond_restr 3.393
    r_scangle_it 8.614
    r_scbond_it 6.304
    r_mcangle_it 4.023
    r_mcbond_it 2.851
    r_gen_planes_refined 0.009
    r_chiral_restr 0.089
    r_dihedral_angle_4_deg 14.474
    r_dihedral_angle_3_deg 12.43
    r_dihedral_angle_2_deg 35.376
    r_dihedral_angle_1_deg 5.995
    r_angle_refined_deg 1.639
    r_bond_refined_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2070
    Nucleic Acid Atoms 0
    Heterogen Atoms 24
    Solvent Atoms 304
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phaser
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building Phaser
    data collection HKL-2000