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X-RAY DIFFRACTION
Materials and Methods page
3W04
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.5
    Temperature 293.0
    Details 8% PEG6000, 5% MPD, 0.1M Na-HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 47.99 α = 90
    b = 88.19 β = 90
    c = 121.23 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX225HE
    Details mirros
    Collection Date 2010-05-23
     
    Diffraction Radiation
    Monochromator Rotated-inclined double-crystal monochromator , Si (111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 1.00
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.45
    Resolution(Low) 50
    Number Reflections(All) 91864
    Number Reflections(Observed) 91864
    Percent Possible(Observed) 100.0
    Redundancy 5.3
     
    High Resolution Shell Details
    Resolution(High) 1.45
    Resolution(Low) 1.5
    Percent Possible(All) 100.0
    Mean I Over Sigma(Observed) 3.3
    R-Sym I(Observed) 0.617
    Redundancy 6.4
    Number Unique Reflections(All) 9084
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.45
    Resolution(Low) 25.62
    Number of Reflections(Observed) 86870
    Number of Reflections(R-Free) 4583
    Percent Reflections(Observed) 99.7
    R-Factor(Observed) 0.16209
    R-Work 0.16041
    R-Free 0.19378
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.313
    Anisotropic B[1][1] -0.02
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.02
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.45
    Shell Resolution(Low) 1.489
    Number of Reflections(R-Free) 321
    Number of Reflections(R-Work) 6305
    R-Factor(R-Work) 0.231
    R-Factor(R-Free) 0.256
    Percent Reflections(Observed) 99.53
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 5.264
    r_scbond_it 3.522
    r_mcangle_it 2.455
    r_mcbond_it 1.466
    r_gen_planes_refined 0.015
    r_chiral_restr 0.176
    r_dihedral_angle_4_deg 18.593
    r_dihedral_angle_3_deg 13.23
    r_dihedral_angle_2_deg 28.186
    r_dihedral_angle_1_deg 5.806
    r_angle_refined_deg 2.54
    r_bond_refined_d 0.029
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4073
    Nucleic Acid Atoms 0
    Heterogen Atoms 59
    Solvent Atoms 452
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MOLREP
    data collection HKL-2000