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X-RAY DIFFRACTION
Materials and Methods page
3VZV
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8.1
    Temperature 293.0
    Details 2.4M Ammonium sulfate, 5% PEG 200, 0.1M Tris HCl, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 58.26 α = 90
    b = 66.08 β = 90
    c = 80.42 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS VII
    Details confocal mirrors
    Collection Date 2005-11-20
     
    Diffraction Radiation
    Monochromator graphite
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.54178
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.8
    Resolution(Low) 50
    Number Reflections(Observed) 7899
    Percent Possible(Observed) 97.5
    R Merge I(Observed) 0.039
    Redundancy 6.2
     
    High Resolution Shell Details
    Resolution(High) 2.8
    Resolution(Low) 2.85
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.435
    Mean I Over Sigma(Observed) 3.4
    Redundancy 6.8
    Number Unique Reflections(All) 409
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.8
    Resolution(Low) 30.56
    Number of Reflections(Observed) 7342
    Number of Reflections(R-Free) 387
    Percent Reflections(Observed) 95.81
    R-Factor(Observed) 0.24965
    R-Work 0.24784
    R-Free 0.2844
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.216
    Anisotropic B[1][1] 0.44
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.47
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.91
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8
    Shell Resolution(Low) 2.872
    Number of Reflections(R-Free) 16
    Number of Reflections(R-Work) 396
    R-Factor(R-Work) 0.331
    R-Factor(R-Free) 0.315
    Percent Reflections(Observed) 76.72
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.013
    r_chiral_restr 0.151
    r_dihedral_angle_4_deg 25.047
    r_dihedral_angle_3_deg 21.589
    r_dihedral_angle_2_deg 42.061
    r_dihedral_angle_1_deg 8.533
    r_angle_refined_deg 2.248
    r_bond_refined_d 0.017
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1414
    Nucleic Acid Atoms 0
    Heterogen Atoms 76
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building MOLREP
    data collection HKL-2000