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X-RAY DIFFRACTION
Materials and Methods page
3VZI
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 293.0
    Details 25% PEG3350, 0.1M DL-malic acid, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.97 α = 90
    b = 54.84 β = 90
    c = 179.36 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 270
    Collection Date 2012-03-17
     
    Diffraction Radiation
    Monochromator DCM Si (111) Crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PAL/PLS BEAMLINE 6B
    Wavelength List 0.9795
    Site PAL/PLS
    Beamline 6B
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.65
    Resolution(Low) 20
    Number Reflections(Observed) 13585
    Percent Possible(Observed) 99.8
     
    High Resolution Shell Details
    Resolution(High) 2.65
    Resolution(Low) 2.74
    Percent Possible(All) 99.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.66
    Resolution(Low) 20.0
    Number of Reflections(Observed) 12860
    Number of Reflections(R-Free) 673
    Percent Reflections(Observed) 98.85
    R-Factor(Observed) 0.21014
    R-Work 0.20615
    R-Free 0.28674
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 67.135
    Anisotropic B[1][1] -1.33
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.86
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.53
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.66
    Shell Resolution(Low) 2.729
    Number of Reflections(R-Free) 44
    Number of Reflections(R-Work) 743
    R-Factor(R-Work) 0.276
    R-Factor(R-Free) 0.347
    Percent Reflections(Observed) 89.84
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.006
    r_chiral_restr 0.1
    r_dihedral_angle_4_deg 22.032
    r_dihedral_angle_3_deg 21.156
    r_dihedral_angle_2_deg 34.308
    r_dihedral_angle_1_deg 6.843
    r_angle_refined_deg 1.488
    r_bond_refined_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3359
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 52
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection HKL-2000