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X-RAY DIFFRACTION
Materials and Methods page
3VY8
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.0
    Details 30% Jeffamine M600, 50mM CsCl, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.2 α = 90
    b = 83.2 β = 90
    c = 106.42 γ = 120
     
    Space Group
    Space Group Name:    P 63
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type PSI PILATUS 6M
    Collection Date 2011-09-29
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength List 0.976
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 16.5
    Observed Criterion Sigma(I) 1.67
    Resolution(High) 2.1
    Resolution(Low) 50
    Number Reflections(Observed) 23050
    Percent Possible(Observed) 97.4
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.15
    Percent Possible(All) 75.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.12
    Resolution(Low) 42.8
    Cut-off Sigma(F) 16.5
    Number of Reflections(Observed) 21933
    Number of Reflections(R-Free) 1091
    Percent Reflections(Observed) 96.74
    R-Factor(Observed) 0.21233
    R-Work 0.21017
    R-Free 0.2535
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 47.26
    Anisotropic B[1][1] 0.1
    Anisotropic B[1][2] 0.05
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.1
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.16
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.118
    Shell Resolution(Low) 2.173
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1117
    R-Factor(R-Work) 0.335
    R-Factor(R-Free) 0.375
    Percent Reflections(Observed) 68.78
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.009
    r_chiral_restr 0.137
    r_dihedral_angle_4_deg 19.44
    r_dihedral_angle_3_deg 18.3
    r_dihedral_angle_2_deg 38.337
    r_dihedral_angle_1_deg 7.722
    r_angle_refined_deg 1.914
    r_bond_refined_d 0.017
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2593
    Nucleic Acid Atoms 0
    Heterogen Atoms 3
    Solvent Atoms 93
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Regid body refinement
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building Regid version: body refinement
    data collection HKL-2000