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X-RAY DIFFRACTION
Materials and Methods page
3VVW
  •   Crystallization Hide
    Crystallization Experiments
    Method Vapor Diffusion
    pH 7
    Temperature 293.0
    Details 16% PEG6000, 0.01M sodium citrate , pH 7.0, Vapor Diffusion, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 195.72 α = 90
    b = 37.42 β = 94.66
    c = 40.28 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol Single Wavelength
     
    Diffraction Source
    Source Synchrotron
    Type ESRF BEAMLINE ID29
    Wavelength List 1.0000
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 3.2
    Observed Criterion Sigma(I) 3.2
    Resolution(High) 2.5
    Resolution(Low) 48.77
    Number Reflections(All) 10306
    Number Reflections(Observed) 10306
    Percent Possible(Observed) 99.8
    B(Isotropic) From Wilson Plot 31.68
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.64
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.446
    Mean I Over Sigma(Observed) 3.2
    Redundancy 4.1
    Number Unique Reflections(All) 1472
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 40.147
    Cut-off Sigma(I) 3.2
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 10302
    Number of Reflections(Observed) 10302
    Number of Reflections(R-Free) 487
    Percent Reflections(Observed) 99.7
    R-Factor(Observed) 0.2121
    R-Work 0.2101
    R-Free 0.252
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.3352
    Anisotropic B[1][1] -6.4455
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 4.6395
    Anisotropic B[2][2] 11.0554
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.6099
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.8618
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 3220
    R-Factor(R-Work) 0.2701
    R-Factor(R-Free) 0.3484
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8618
    Shell Resolution(Low) 3.6052
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 3251
    R-Factor(R-Work) 0.2118
    R-Factor(R-Free) 0.2711
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6052
    Shell Resolution(Low) 40.152
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 3344
    R-Factor(R-Work) 0.1887
    R-Factor(R-Free) 0.2107
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.422
    f_plane_restr 0.006
    f_chiral_restr 0.08
    f_angle_d 1.046
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1861
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 41
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution phenix
    Structure Refinement PHENIX (phenix.refine: dev_723)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix