X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 4.6
Temperature 295.0
Details 0.14M calcium chloride, 0.1M sodium acetate, 18 %(v/v) isopropanol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 41.99 α = 90
b = 47.86 β = 90
c = 109.89 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2012-05-21
Diffraction Radiation
Monochromator Protocol
Bartels Monochromator Crystal Type Si (111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.53 36.09 98.7 0.036 0.037 -- 3.33 -- 34063 -3.0 -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.53 1.62 98.3 0.381 0.463 4.23 3.1 10256

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.53 36.088 -- 1.03 -- 34063 1703 99.45 0.1973 0.1973 0.1962 0.2178 Radom
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5298 1.5748 -- 136 2597 0.2269 0.2357 -- 98.0
X Ray Diffraction 1.5748 1.6256 -- 141 2679 0.2172 0.2503 -- 100.0
X Ray Diffraction 1.6256 1.6837 -- 141 2673 0.2023 0.2517 -- 100.0
X Ray Diffraction 1.6837 1.7512 -- 141 2680 0.2039 0.2215 -- 100.0
X Ray Diffraction 1.7512 1.8309 -- 141 2669 0.2057 0.2481 -- 100.0
X Ray Diffraction 1.8309 1.9274 -- 139 2642 0.2733 0.3105 -- 98.0
X Ray Diffraction 1.9274 2.0481 -- 140 2668 0.2241 0.2388 -- 100.0
X Ray Diffraction 2.0481 2.2062 -- 143 2696 0.1778 0.2309 -- 100.0
X Ray Diffraction 2.2062 2.4282 -- 141 2679 0.1966 0.2225 -- 99.0
X Ray Diffraction 2.4282 2.7795 -- 144 2733 0.1771 0.1865 -- 100.0
X Ray Diffraction 2.7795 3.5014 -- 146 2769 0.1775 0.2178 -- 100.0
X Ray Diffraction 3.5014 36.0981 -- 150 2875 0.1965 0.1957 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -4.3062
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 7.1344
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.8282
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.826
f_dihedral_angle_d 14.784
f_bond_d 0.006
f_chiral_restr 0.048
f_plane_restr 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1888
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 197

Software

Software
Software Name Purpose
RemDAq data collection
PHASER phasing version: MR
PHENIX refinement version: (phenix.refine: 1.7.3_928)
XDS data reduction version: package
XDS data scaling version: package