POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
3VRK
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 298.0
    Details 1.2M AMMONIUM SULFATE, 200MM SODIIUM CHLORIDE, 30% GLYCEROL 200MM TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 90.31 α = 90
    b = 90.31 β = 90
    c = 105.13 γ = 90
     
    Space Group
    Space Group Name:    I 4 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 95
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2010-03-07
     
    Diffraction Radiation
    Monochromator Triangular Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-5A
    Wavelength List 1.000
    Site PHOTON FACTORY
    Beamline BL-5A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.33
    Resolution(Low) 50
    Number Reflections(All) 49976
    Number Reflections(Observed) 49976
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.054
    B(Isotropic) From Wilson Plot 10.0
    Redundancy 14.1
     
    High Resolution Shell Details
    Resolution(High) 1.33
    Resolution(Low) 1.38
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.334
    Mean I Over Sigma(Observed) 10.9
    R-Sym I(Observed) 0.334
    Redundancy 13.9
    Number Unique Reflections(All) 4902
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.33
    Resolution(Low) 10.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 47313
    Number of Reflections(Observed) 47313
    Number of Reflections(R-Free) 2493
    Percent Reflections(Observed) 95.0
    R-Factor(Observed) 0.1558
    R-Work 0.1558
    R-Free 0.2043
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    s_approx_iso_adps 0.047
    s_similar_adp_cmpnt 0.03
    s_rigid_bond_adp_cmpnt 0.004
    s_anti_bump_dis_restr 0.028
    s_non_zero_chiral_vol 0.07
    s_zero_chiral_vol 0.061
    s_from_restr_planes 0.0306
    s_similar_dist 0.0
    s_angle_d 0.028
    s_bond_d 0.012
     
    Coordinate Error
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1583
    Nucleic Acid Atoms 0
    Heterogen Atoms 5
    Solvent Atoms 155
     
     
  •   Software and Computing Hide
    Computing
    Data Collection UGUI
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution Molrep
    Structure Refinement SHELXL-97
     
    Software
    refinement SHELXL-97
    model building Molrep
    data collection UGUI