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X-RAY DIFFRACTION
Materials and Methods page
3VQZ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.0
    Details 26% PEG 6000, 1.0M Lithium Chloride, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.03 α = 90
    b = 67.03 β = 90
    c = 46.79 γ = 120
     
    Space Group
    Space Group Name:    P 31
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2012-02-19
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE AR-NW12A
    Wavelength List 1.00000
    Site PHOTON FACTORY
    Beamline AR-NW12A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.2
    Resolution(Low) 50
    Number Reflections(Observed) 11951
    Percent Possible(Observed) 100.0
    Redundancy 11.3
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.24
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.29
    Redundancy 11.4
    Number Unique Reflections(All) 621
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 29.02
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 11951
    Number of Reflections(Observed) 11367
    Number of Reflections(R-Free) 570
    Percent Reflections(Observed) 99.96
    R-Factor(Observed) 0.1701
    R-Work 0.1674
    R-Free 0.22379
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.94
    Anisotropic B[1][1] -1.67
    Anisotropic B[1][2] -0.84
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.67
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.51
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.257
    Number of Reflections(R-Free) 40
    Number of Reflections(R-Work) 873
    R-Factor(R-Work) 0.164
    R-Factor(R-Free) 0.294
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.075
    r_dihedral_angle_4_deg 18.341
    r_dihedral_angle_3_deg 15.407
    r_dihedral_angle_2_deg 32.582
    r_dihedral_angle_1_deg 6.178
    r_angle_refined_deg 1.178
    r_bond_refined_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1907
    Nucleic Acid Atoms 0
    Heterogen Atoms 9
    Solvent Atoms 146
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AMoRE
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building AMoRE
    data collection HKL-2000