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X-RAY DIFFRACTION
Materials and Methods page
3VQ5
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.6
    Temperature 295.0
    Details 1.6M AmSO4, 0.1M Na Citrate pH 4.6, 50mM CdCl2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.13 α = 90
    b = 49.13 β = 90
    c = 103.05 γ = 120
     
    Space Group
    Space Group Name:    P 32
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Details Mirror
    Collection Date 2009-05-29
     
    Diffraction Radiation
    Monochromator double mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.979461
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 50
    Number Reflections(Observed) 30488
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.059
    Redundancy 5.6
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.75
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.319
    Mean I Over Sigma(Observed) 5.06
    R-Sym I(Observed) 0.422
    Redundancy 5.6
    Number Unique Reflections(All) 2553
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 42.55
    Number of Reflections(all) 30492
    Number of Reflections(Observed) 28963
    Number of Reflections(R-Free) 1525
    Percent Reflections(Observed) 99.61
    R-Factor(All) 0.1918
    R-Factor(Observed) 0.17948
    R-Work 0.17772
    R-Free 0.21321
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.336
    Anisotropic B[1][1] 1.02
    Anisotropic B[1][2] 0.51
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.02
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.54
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.744
    Number of Reflections(R-Free) 114
    Number of Reflections(R-Work) 2161
    R-Factor(R-Work) 0.205
    R-Factor(R-Free) 0.216
    Percent Reflections(Observed) 99.78
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.013
    r_chiral_restr 0.162
    r_dihedral_angle_4_deg 19.174
    r_dihedral_angle_3_deg 15.485
    r_dihedral_angle_2_deg 34.981
    r_dihedral_angle_1_deg 6.428
    r_angle_refined_deg 2.185
    r_bond_refined_d 0.021
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2041
    Nucleic Acid Atoms 0
    Heterogen Atoms 66
    Solvent Atoms 106
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blueice
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution AMoRE
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building AMoRE
    data collection Blueice