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X-RAY DIFFRACTION
Materials and Methods page
3VP6
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 6
    Temperature 298.0
    Details 25% PEG 3500, 100mM Bis-Tris, pH 6.0, vapor diffusion, hanging drop, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.01 α = 90
    b = 64.08 β = 108.14
    c = 102.65 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2008-04-17
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX1
    Wavelength List 0.953638
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.1
    Resolution(Low) 97.59
    Number Reflections(All) 62211
    Number Reflections(Observed) 62211
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.079
    B(Isotropic) From Wilson Plot 31.78
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.21
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.443
    Mean I Over Sigma(Observed) 1.7
    R-Sym I(Observed) 0.443
    Redundancy 3.7
    Number Unique Reflections(All) 9046
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 24.25
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 62171
    Number of Reflections(R-Free) 3148
    Percent Reflections(Observed) 99.92
    R-Factor(Observed) 0.199
    R-Work 0.1971
    R-Free 0.2343
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.8516
    Anisotropic B[1][1] -0.9422
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -4.625
    Anisotropic B[2][2] -0.1746
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.1169
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.15
    Number of Reflections(R-Free) 205
    Number of Reflections(R-Work) 4364
    R-Factor(R-Work) 0.191
    R-Factor(R-Free) 0.2089
    Percent Reflections(Observed) 99.92
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 18.33
    t_omega_torsion 3.09
    t_angle_deg 1.11
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.279
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7613
    Nucleic Acid Atoms 0
    Heterogen Atoms 38
    Solvent Atoms 266
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Refinement BUSTER 2.10.0
     
    Software
    data extraction pdb_extract version: 3.10
    refinement BUSTER-TNT version: 'BUSTER 2.10.0
    data reduction SCALA version: 3.2.25
    data collection Mosflm