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X-RAY DIFFRACTION
Materials and Methods page
3VHG
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 293.0
    Details 50mM Tris-HCl buffer, 15% PEG3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 43.64 α = 90
    b = 63.53 β = 90
    c = 71.77 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2010-11-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL44XU
    Wavelength 0.9
    Wavelength List 0.9
    Site SPRING-8
    Beamline BL44XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1
    Resolution(Low) 50
    Number Reflections(Observed) 107219
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.044
    Redundancy 4.7
     
    High Resolution Shell Details
    Resolution(High) 1.0
    Resolution(Low) 1.02
    Percent Possible(All) 85.7
    R Merge I(Observed) 0.371
    Mean I Over Sigma(Observed) 3.115
    Redundancy 2.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method AB INITIO
    reflnsShellList 1.0
    Resolution(Low) 10.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 107219
    Number of Reflections(Observed) 106823
    Number of Reflections(R-Free) 5339
    Percent Reflections(Observed) 93.9
    R-Factor(All) 0.1214
    R-Factor(Observed) 0.1109
    R-Free 0.1551
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.0
    Shell Resolution(Low) 1.05
    Number of Reflections(Observed) 13426
    R-Factor(R-Work) 0.212
    Percent Reflections(Observed) 92.22
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    s_approx_iso_adps 0.115
    s_similar_adp_cmpnt 0.046
    s_rigid_bond_adp_cmpnt 0.006
    s_anti_bump_dis_restr 0.074
    s_non_zero_chiral_vol 0.088
    s_zero_chiral_vol 0.087
    s_from_restr_planes 0.0343
    s_similar_dist 0.0
    s_angle_d 0.031
    s_bond_d 0.015
     
    Coordinate Error
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1551
    Nucleic Acid Atoms 0
    Heterogen Atoms 12
    Solvent Atoms 453
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution SHELX
    Structure Refinement SHELXL-97
     
    Software
    refinement SHELXL-97
    model building SHELX